Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq164 372 3e-98
seq245 109 5e-19
seq1073 105 6e-18
seq63 96.9 3e-15
>seq164
Length=162670
Score = 372 bits (412), Expect = 3e-98
Identities = 1232/1899 (65%), Gaps = 57/1899 (3%)
Strand=Plus/Minus
Query 22104 TCTTG-TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162
||||| |||||||| ||||| |||| | || || | || || || || || |||||
Sbjct 46656 TCTTGATCCACTGTGAACTGGATGGGGGCAGCAGCAGCTTGAGTACGCAGGTAGTACATT 46597
Query 22163 CCCGTCTTCAGACCCATCTTCCA---CGCGTAAAAATGTATCGACGTCAATTTTCCATAA 22219
|| ||||||||||||| |||||| |||| || || || || | || ||
Sbjct 46596 CCAGTCTTCAGACCCAGCTTCCAGCCCGCG---AAGTGCATGCTGGTGATCTTGCCCATG 46540
Query 22220 CTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCG 22279
|||| | ||||| | |||| || ||| ||| ||||| || || || || |||
Sbjct 46539 GTCGGATCTTTCATGTGAATGTTGAGGGATTGAGACTGGTCGATGAAGGCGCCACGGTCG 46480
Query 22280 GCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTG 22339
|| ||||| | || | |||||| || || ||||| || |||||||||| | ||
Sbjct 46479 GCAGCCATCTGTACGACGGTACGCTGGGAAATCTCCCACACCGTCTTGTACAAGGCCTTG 46420
Query 22340 ATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTT 22399
| ||| || || ||| | || | ||| || || | ||||| ||
Sbjct 46419 ACCTCGGCAGGGATGTTGGGGATGTTTTGAATGGAGCCATTCTCAGCAATGATGCGGTTC 46360
Query 22400 TTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACC 22459
|| || ||| ||||| || || || | || |||| || | || ||
Sbjct 46359 TTCATGCCGTCGGACCACAGTCCCATCTCGACAAGGTCCTTGAGAAGCCAGGGATTGACG 46300
Query 22460 ACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAA 22519
|| || |||||||| | | |||||||| ||||| |||||||| ||| | ||||||||
Sbjct 46299 ACCTGGAACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTGGAGGTGTAAGGTTCGAAG 46240
Query 22520 GATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGC 22579
| || ||||| ||||| ||||| | || || || ||||| || || | || ||
Sbjct 46239 CACTCGTTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGCATGGGGGCAACGAGCAGA 46180
Query 22580 GAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCGA---CCAGTCCCACA 22634
||| | | |||||||| |||| | | ||||| || || ||||||||| |
Sbjct 46179 CTGTTGCGGACGCCGTGCTGCTTGA---TCTGCTCTTT--CAAAGAGTCCCAGTCCCAGA 46125
Query 22635 GATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCG----CC 22690
| || || ||| | || ||||||||| ||||| || | | || || | |
Sbjct 46124 GGTCAGAGGGCTTGAC---GTCCCACATGTCGTACTGGAGAATCCC----CTTGGAAACA 46072
Query 22691 GGGCTGCCTTCGTACGTTTCGTACGGACCATATATC-GCGGCAAGTTCGCAGCTCGCCTC 22749
||| ||||||||||| ||| | || | | | ||| ||| | |||| |
Sbjct 46071 GGGGAGCCTTCGTACGAGGAGTAGGTGCCTTCTTCCTGCGCCAACTG-GCAGGACATGGT 46013
Query 22750 CAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCG---GCGGCGGC-GA 22805
| ||| ||| || || ||||||||||| |||||||| | || || | || ||
Sbjct 46012 GAGGGCGGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCTCGAGCTTCAGCAGA 45953
Query 22806 CGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATAC 22865
| ||| | ||||| |||| | |||||| || || | ||||| ||||| | ||
Sbjct 45952 C----TCGAAGGGCATGCGCAGGGCAAGGAACGCATCAGCAAGGCCCTGGACGCCGAGAC 45897
Query 22866 CGATCGGTCGGTTTTTCAGATTCGACACTTTT----GCCTCGGGCAAAGGATACCAATTC 22921
|||| || || | || || || || ||||| | | ||| || ||
Sbjct 45896 CGATGGGGCGATGGCGCATGTTG----CTGTTACGGGCCTCCTGAACAGGGTAGTGGTTG 45841
Query 22922 GAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCA 22981
|| || | ||||||||||| | | |||| | || | |
Sbjct 45840 ACGTCAATGATCCTGTTCAAGTTGCGGACGACAACCTGGGTGACCTCGTGCAACTTCTGG 45781
Query 22982 AAGTCGTAAACGCC--CGATTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATT 23037
||||| || ||| || ||||| |||| || || | ||| | || || || ||
Sbjct 45780 AAGTCATAGGTGCCTTCG-TTGTAGTCAACGAAGGTGGGCAGGGCCAGAGAAGCCAGGTT 45722
Query 23038 GCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACA 23097
||| ||||| ||||| || | || |||||| | ||||| || || || ||| |
Sbjct 45721 GCAGACGGCAACCTCATCAGGCGCCGAGTACTCGATGATTTCAGTGCAAAGGTTGGAGCT 45662
Query 23098 CTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCAT 23157
|| || || | || |||||||||| || || ||| | |||||||| |||||
Sbjct 45661 GCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGCAT 45602
Query 23158 GTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTG 23217
| | || |||||||||| ||||| ||| | ||| || ||||| |||| || |
Sbjct 45601 GAAGGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGATGGCGTACCACAGCTTCTGGGCCTT 45542
Query 23218 AACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGG 23276
| ||| || ||| || || ||||||||| | ||||||||| ||||| ||
Sbjct 45541 GATG-GTCTTGCGACCCTTACCCTCGCGCTCGTACTTCTCGTACAACGCCTCAAACTCCT 45483
Query 23277 CACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGT 23336
| |||||||||||||| ||||||| | | | |||||||||||| |||| ||
Sbjct 45482 CGCCGTAACAGTCGGCGAGGCCGGAGCACTCGTTGGGACACATGAGAGTCCAGTCACCGT 45423
Query 23337 CATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGG 23396
|| || || | |||| || ||||| || ||||| || ||| ||| || |||||||
Sbjct 45422 TCTTCTCGACTCTCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGG 45363
Query 23397 CGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCAT 23456
| || |||||||| |||||| |||||| | ||| | || || || || || || |
Sbjct 45362 CACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGATCGAGGAACTCGAAGACATCGGCGT 45303
Query 23457 GCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGT 23516
|||| ||||| ||||| | ||| || || || |||| ||| || ||||| || ||||| |
Sbjct 45302 GCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTACCGCCTTGGTCGACAT 45243
Query 23517 AACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTA 23576
| || || ||||||||| | || | ||||| || |||| ||||||||| | |||
Sbjct 45242 AGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGGACGACACCGTTGGAGGTTCCGTTGG 45183
Query 23577 CGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGC 23636
|||||| | || || | | |||| | || |||| || ||| ||||||||
Sbjct 45182 TGCCCGCGATGTAGGAGCCAGTGGAACGAATGCGATGGACGTTGAGACCGATGCCTCCAG 45123
Query 23637 CCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCT 23696
|| || || ||||| ||||| || || |||||||||||||| |||||| |||||
Sbjct 45122 CCATCTTGGAAATCATGGCGCACGTCTTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCT 45063
Query 23697 CTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACA 23756
| || | |||| | ||| |||||||||| ||| || | || || |||| |||||
Sbjct 45062 CCTTCATATCGACGAGGAAGCACGAAGACAGTTGGGCCTGAGGGGTGCCGGCGTTGAACA 45003
Query 23757 GTGTCGGGCTGGCGTGCGT--AAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGC 23814
| || || ||| || || | || | | ||||||| | |||||||| ||||| |
Sbjct 45002 GAGTGGGCGAGGCATGGGTGAACAGCTTGC--TCGACATCAAGTTGTACGTCTCGATAAC 44945
Query 23815 GGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCT 23874
| |||| || || || || || | ||||| ||||| ||||||| ||| || ||
Sbjct 44944 GCGCTCAACGTTGTCACCCCAAATGCCAACAGCGACACGCATAATCATGTGTTGCGGCCT 44885
Query 23875 CTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAA 23934
|||| | | ||| | || |||| || || || | | || || || || || ||
Sbjct 44884 CTCGGCAATCTTGCCATCGATCTTGAGGAGGTACGACCTCTCCAAGGTCTTGAAGCCGAA 44825
Query 23935 ATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973
|| | ||||| |||||||| |||| || || |||||
Sbjct 44824 GTATTGGTAGTTGAAGTCACGGTCGTAGACAATCGCCGA 44786
>seq245
Length=397273
Score = 109 bits (120), Expect = 5e-19
Identities = 155/215 (72%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| ||||| |||| ||||| |||||||| | || || || | ||
Sbjct 356440 ATGCAAATTTTCGTCAAGACCTTGACCGGCAAGACGATCACTTTGGAAGTCGAGTCTTCA 356381
Query 31253 GACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGAC 31309
|||| |||| | || || ||| || | | ||||||||| ||| | || || |||
Sbjct 356380 GACACCATCGACAATGTGAA---GAGCAAGATCCAGGACAAGGAGGGCATTCCTCCTGAC 356324
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
||||| ||||| || ||||||||||| |||||||| || | || | ||||||
Sbjct 356323 CAGCAACGTCTTATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGTACCCTATCCGATTAC 356264
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || || || ||||| || || |||| ||
Sbjct 356263 AACATCCAGAAGGAGTCGACGCTGCACTTGGTGCT 356229
Score = 95.1 bits (104), Expect = 1e-14
Identities = 144/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276
|| || || || ||||| |||| ||||| | ||||| | |||| | |||||
Sbjct 356872 ACCGGAAAGACCATCACTCTCGAGGTTGAGTCCTCCGATACCATCGACAATGTCAAGTCC 356813
Query 31277 AGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAA 31336
| || ||||||||| || | || |||||||||||||| || || |||||||||||
Sbjct 356812 AAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGCCTGATTTTCGCTGGCAAG 356753
Query 31337 CAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCAT 31396
||| | || || | || | ||||| || ||||| ||||| ||||| ||||| ||
Sbjct 356752 CAGCTTGAGGATGGTCGCACCCTCAGCGACTACAACATCCAAAAGGAATCCACTCTCCAC 356693
Query 31397 CTGGTACTTAGACTGAGGGGCGGTA 31421
|| || ||| | ||| | || ||||
Sbjct 356692 CTCGTCCTTCGTCTGCGTGGTGGTA 356668
Score = 89.7 bits (98), Expect = 5e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| ||||||||||| ||||| || || || | || || || | ||
Sbjct 356668 ATGCAGATTTTCGTCAAGACTCTGACCGGCAAGACCATTACTTTGGAGGTCGAGTCTTCG 356609
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | |||| | ||||| || || ||||||||| || | || || ||||||
Sbjct 356608 GATACCATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAG 356549
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || ||||| || ||||| | || || | || | |||||| |||
Sbjct 356548 CAGCGTCTCATCTTCGCCGGAAAACAACTTGAGGATGGTCGCACGCTCTCCGATTACAAC 356489
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || || || ||| | || |||| ||
Sbjct 356488 ATTCAGAAGGAGTCTACTTTGCACTTGGTGCT 356457
>seq1073
Length=8604
Score = 105 bits (116), Expect = 6e-18
Identities = 202/295 (68%), Gaps = 7/295 (2%)
Strand=Plus/Plus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|||||| | |||||||| ||||| || || || || ||||||| ||| || | ||| ||
Sbjct 2194 ATTTGGCAAATGTACAAGAAGGCCGAGGCGTCATTCTGGACCGCCGAGGAGATTGACTTG 2253
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTT--ATTA 57684
|| ||||| || ||| ||| || | | || || | ||||| || | ||
Sbjct 2254 TCCAAGGACCTTCACGACTGGAATAACAAGATTAACGA--CGACGAGAAGTTCTTCATCT 2311
Query 57685 AACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAA 57744
||| | | || || ||||| || || || |||||||| |||||||| |||| |||
Sbjct 2312 CTCACATCCTCGCCTTCTTCGCTGCCTCGGACGGTATTGTCAACGAGAACCTGGTTGAAC 2371
Query 57745 GATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804
| || ||||| || || | |||||| | ||||| ||||| || || | |
Sbjct 2372 GCTTCAGCGGTGAAGTCCAGGTCCCCGAGGCGCGTTGCTTCTACGGCTTCCAGATCATGA 2431
Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859
| |||||| | || || || | ||||| || ||||||||||||||| | |||||
Sbjct 2432 TGGAAAACATCCACTCCGAGACCTATTCTCTTCTCATCGATACGTACATTAAGGA 2486
>seq63
Length=145700
Score = 96.9 bits (106), Expect = 3e-15
Identities = 168/244 (69%), Gaps = 4/244 (2%)
Strand=Plus/Plus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
||| |||||| || ||||| ||||| || || || || || |||||| | || || ||
Sbjct 39368 CAATCATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGT 39427
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
| ||||||| |||| | ||||| | || ||||||||| ||| | || ||||
Sbjct 39428 CTTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCG 39487
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
|||||||||| | || ||||| ||||| ||| | || ||| || || ||| |
Sbjct 39488 ACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACT 39547
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGA 31423
| ||||| || || || || || || || ||||| || | ||| | || ||| |||
Sbjct 39548 ACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTGCGTGGTGGTGGCAAGA 39607
Query 31424 AGCG 31427
||||
Sbjct 39608 AGCG 39611
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445759290025920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |