Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq164 158 2e-33
seq1073 105 8e-18
>seq164
Length=162670
Score = 158 bits (174), Expect = 2e-33
Identities = 450/686 (66%), Gaps = 18/686 (3%)
Strand=Plus/Minus
Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293
|||||||| | | ||| || |||| | || |||| ||||| ||||||||||| |||
Sbjct 45447 GGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGATCAGGGATC 45388
Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353
||||| || | || ||||| | | | ||||| || || ||||| ||||
Sbjct 45387 CAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGA 45328
Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413
||||||||| | | | ||| | ||||| || || | ||| ||||| | | |||||
Sbjct 45327 TCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGT 45268
Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473
|| ||||| || || || || | || | ||||||||| || | || | || ||| ||
Sbjct 45267 CGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGG 45208
Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA 63533
| | |||||| || | || ||||| || | ||| ||| ||| ||| |||||| |
Sbjct 45207 ACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAACGAATGCGA 45148
Query 63534 CTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAAC 63590
| ||| ||||| || || || ||||| || || || | ||||| ||| || |
Sbjct 45147 TGGACGTTG--AGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCA-CGTCTTGAGG 45091
Query 63591 GTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT 63650
||||| ||||||||||| ||| || || |||| | | || || || ||||| |
Sbjct 45090 GTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAAGACAGT 45031
Query 63651 TGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63710
||| ||| || || || || || | || || || || || || ||| ||
Sbjct 45030 TGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAACAGCTTGCTC 44971
Query 63711 GAAAGTAGATTGTACGTCTCAATA----GCTGA--GTCTATATCCCATTGATGAATTCCT 63764
|| | | ||||||||||| ||| ||| | || | |||| ||| ||
Sbjct 44970 GACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCA------AATGCCA 44917
Query 63765 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAAC 63824
|| ||||||||||| | |||||| || || || || |||| ||| | || || |
Sbjct 44916 ACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGATCTTGAGG 44857
Query 63825 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 63884
| ||| || | ||||| || || || || || || | ||| ||||| || |||||
Sbjct 44856 AGGTACGACCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGTAG 44797
Query 63885 ATAATAACCGAATTGAGCTTATCCTT 63910
| ||| |||| | ||||| |||||
Sbjct 44796 ACAATCGCCGAGTCGAGCTCCTCCTT 44771
Score = 82.4 bits (90), Expect = 1e-10
Identities = 134/192 (70%), Gaps = 1/192 (1%)
Strand=Plus/Minus
Query 62036 CTTG-TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 62094
|||| |||| |||||| || ||||| || | || | || ||||| || ||||||||||
Sbjct 46655 CTTGATCCACTGTGAACTGGATGGGGGCAGCAGCAGCTTGAGTACGCAGGTAGTACATTC 46596
Query 62095 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 62154
| || || ||||| || |||| || || ||||| || || | ||| |||
Sbjct 46595 CAGTCTTCAGACCCAGCTTCCAGCCCGCGAAGTGCATGCTGGTGATCTTGCCCATGGTCG 46536
Query 62155 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62214
||||| || || || || | |||||| || ||||||||||| || | ||| ||||
Sbjct 46535 GATCTTTCATGTGAATGTTGAGGGATTGAGACTGGTCGATGAAGGCGCCACGGTCGGCAG 46476
Query 62215 CCATTTTTATGA 62226
|||| | || ||
Sbjct 46475 CCATCTGTACGA 46464
>seq1073
Length=8604
Score = 105 bits (116), Expect = 8e-18
Identities = 149/209 (71%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641
|| || |||||| |||||| || ||||| | | || | ||| || || || || ||
Sbjct 2806 CAGGCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGG 2747
Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701
|| ||||| || |||||||| || |||||||| ||||| || || | ||||| ||||||
Sbjct 2746 CCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAAG 2687
Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATGT 33758
|| || || || ||||| ||||| | ||| | || | || || | ||| |
Sbjct 2686 ATGCCCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAAAGTGGACTTCTGGTCGTTG 2627
Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTT 33787
|||||||| | ||||| |||||||||||
Sbjct 2626 ATCCACTTGAGGGCCCAGTCGGCCTTCTT 2598
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629807554409280
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