Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq164 140 4e-28
seq1073 104 3e-17
>seq164
Length=162670
Score = 140 bits (154), Expect = 4e-28
Identities = 446/686 (65%), Gaps = 18/686 (3%)
Strand=Plus/Minus
Query 66027 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 66086
|||||||| | | ||| || |||| | || |||| ||||| ||||||||||| |||
Sbjct 45447 GGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGATCAGGGATC 45388
Query 66087 CAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 66146
||||| || | || | ||| | || | ||||| || || ||||| ||||
Sbjct 45387 CAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGA 45328
Query 66147 TCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 66206
||||||||| | | | ||| ||||| || || | ||| ||||| | | |||||
Sbjct 45327 TCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGT 45268
Query 66207 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 66266
|| ||||| || || || || | || | ||||||||| || | || | || ||| ||
Sbjct 45267 CGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGG 45208
Query 66267 ATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTA 66326
| | ||| ||||| || || ||||| || | ||| ||| ||| | | |||||| |
Sbjct 45207 ACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAACGAATGCGA 45148
Query 66327 CTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAAC 66383
| ||| ||||| || || || ||||| || || || | ||||| ||| || |
Sbjct 45147 TGGACGTTG--AGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCA-CGTCTTGAGG 45091
Query 66384 GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT 66443
|| || |||||||| || || || ||| |||| | | || || || ||||| |
Sbjct 45090 GTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAAGACAGT 45031
Query 66444 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 66503
||| || || || || || || | || || || || || || ||| ||
Sbjct 45030 TGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAACAGCTTGCTC 44971
Query 66504 GAAAGTAGATTGTACGTCTCAATA----GCTGA--GTCTATATCCCATTGATGAATTCCT 66557
|| | | ||||||||||| ||| ||| | || | |||| ||| ||
Sbjct 44970 GACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCA------AATGCCA 44917
Query 66558 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAAC 66617
|| ||||||||||| | |||||| || || || || | |||||| | || || |
Sbjct 44916 ACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGATCTTGAGG 44857
Query 66618 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 66677
| ||| || | ||||| || || || || || || | ||| ||||| || |||||
Sbjct 44856 AGGTACGACCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGTAG 44797
Query 66678 ATAATAACCGAGTTGAGTTTATCCTT 66703
| ||| |||||| ||| | |||||
Sbjct 44796 ACAATCGCCGAGTCGAGCTCCTCCTT 44771
>seq1073
Length=8604
Score = 104 bits (114), Expect = 3e-17
Identities = 150/210 (71%), Gaps = 5/210 (2%)
Strand=Plus/Minus
Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217
|| || |||||| ||| || || ||||| | | || | ||| ||||| || || ||
Sbjct 2806 CAGGCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGG 2747
Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277
|| ||||| || |||||||| || |||||||| ||||||||||| | || || |||||
Sbjct 2746 CCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAAG 2687
Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT----GTCATG 36333
|| || || || || || ||||| | ||| | || | || || ||| ||| |
Sbjct 2686 ATGCCCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAAAGTGG-ACTTCTGGTCGTT 2628
Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTT 36363
|||||||| | ||||| |||||||||||
Sbjct 2627 GATCCACTTGAGGGCCCAGTCGGCCTTCTT 2598
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658162302143840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |