Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq410 100 2e-16
>seq410
Length=292899
Score = 100 bits (110), Expect = 2e-16
Identities = 209/306 (68%), Gaps = 18/306 (6%)
Strand=Plus/Minus
Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGG 21170
|||||||||||| || | ||| || || ||||| |||||| | ||||||||||||
Sbjct 35728 ACGTAAAACTGAGCAAACATGTGGCAGGGCGGGAGCGCCATCTTCTTCAGGTCCGCGGGG 35669
Query 21171 TTCCACGCGCACATAACGATGCGCCGATCGT--GGGGCCGCCT---GTTAATTAGATCCA 21225
|||||||||| || | ||| || || |||| ||| || || ||| || || |
Sbjct 35668 TTCCACGCGCTCAGCAGGATCCGGCGGTCGTACGGGTTCGTCTTGAGTT--TTTGAATGA 35611
Query 21226 CCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACT 21285
|| || ||| ||||| || ||||| ||| |||| | | ||| | |||||
Sbjct 35610 CCTCG---GCCAGTTGGTCGACGCCCTGGCCCGTATAGTCCGTCTTGGCGTCGACGTACT 35554
Query 21286 CCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGC---CCTCGCGGC 21342
| || || || || | ||| ||||| |||||||| || || ||||||| | ||||||
Sbjct 35553 CGGCGCCGAAGTGCCGCCATTGGAAGCCGTACACGGGGCCGAGATCGCCGACTTCGCGGT 35494
Query 21343 GGTCCCCGAAGCCCTGCGCCGCCAA-AAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTT 21401
|| ||| || | | | ||| ||| |||| || |||| |||||||||| ||
Sbjct 35493 GG----GAAAGGCCGACACTGTCAAGAAACTCGCGCGAGCCGTTTCCGTCCCAAATCTTG 35438
Query 21402 ACGCCG 21407
| ||||
Sbjct 35437 ATGCCG 35432
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427769347548480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |