Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq410 100 2e-16 >seq410 Length=292899 Score = 100 bits (110), Expect = 2e-16 Identities = 209/306 (68%), Gaps = 18/306 (6%) Strand=Plus/Minus Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGG 21170 |||||||||||| || | ||| || || ||||| |||||| | |||||||||||| Sbjct 35728 ACGTAAAACTGAGCAAACATGTGGCAGGGCGGGAGCGCCATCTTCTTCAGGTCCGCGGGG 35669 Query 21171 TTCCACGCGCACATAACGATGCGCCGATCGT--GGGGCCGCCT---GTTAATTAGATCCA 21225 |||||||||| || | ||| || || |||| ||| || || ||| || || | Sbjct 35668 TTCCACGCGCTCAGCAGGATCCGGCGGTCGTACGGGTTCGTCTTGAGTT--TTTGAATGA 35611 Query 21226 CCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACT 21285 || || ||| ||||| || ||||| ||| |||| | | ||| | ||||| Sbjct 35610 CCTCG---GCCAGTTGGTCGACGCCCTGGCCCGTATAGTCCGTCTTGGCGTCGACGTACT 35554 Query 21286 CCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGC---CCTCGCGGC 21342 | || || || || | ||| ||||| |||||||| || || ||||||| | |||||| Sbjct 35553 CGGCGCCGAAGTGCCGCCATTGGAAGCCGTACACGGGGCCGAGATCGCCGACTTCGCGGT 35494 Query 21343 GGTCCCCGAAGCCCTGCGCCGCCAA-AAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTT 21401 || ||| || | | | ||| ||| |||| || |||| |||||||||| || Sbjct 35493 GG----GAAAGGCCGACACTGTCAAGAAACTCGCGCGAGCCGTTTCCGTCCCAAATCTTG 35438 Query 21402 ACGCCG 21407 | |||| Sbjct 35437 ATGCCG 35432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427769347548480