Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq245 100 3e-16 seq1073 96.9 3e-15 seq63 82.4 8e-11 >seq245 Length=397273 Score = 100 bits (110), Expect = 3e-16 Identities = 165/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || || || | ||| | || ||||| | ||| ||||| || || ||||| |||||| Sbjct 356211 TGACCACCACGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCG 356270 Query 139595 CTCATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGG 139652 || | | ||| || || | ||| || ||||| |||| ||||||||||| || | Sbjct 356271 G--ATAGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAG 356328 Query 139653 GAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCT 139712 |||| ||||| || ||||| ||| || || | | || | ||||| | | || Sbjct 356329 GAGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCTGAAGACT 356388 Query 139713 CCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 | || || | || | ||||||||||||||| || || ||||| ||||||||| || Sbjct 356389 CGACTTCCAAAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAAATTTGCATACCT 356444 >seq1073 Length=8604 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 52549 GTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCC 52608 ||||| || | ||||| |||| || ||||| | || |||||| | || | || || Sbjct 2583 GTTCCCTGCATTCGCAAGAAGGCCGACTGGGCCCTCAAGTGGATCAACGACCAGAAGTCC 2642 Query 52609 ACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGT 52668 ||||| || | ||||| ||||| || ||| || || || | || || || ||| Sbjct 2643 ACTTTCGCTCAGCGTCTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCC 2702 Query 52669 TTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAA 52727 |||||| | || |||| |||| || | ||| | | ||||| ||||| || || ||| Sbjct 2703 TTTGCGTCCATCTTTTGGCTCAAGAAGCGTGGTC-TCATGCCTGGCCTGACCTTCTCCAA 2761 Query 52728 CGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTG 52772 || | || || |||||||||||| ||||||| |||||||| || Sbjct 2762 TGAACTCATCTCTCGCGACGAAGGACTGCACACCGATTTTGCCTG 2806 >seq63 Length=145700 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || ||||| || || ||||| || ||| || |||| | Sbjct 39587 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCG 39528 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || || || |||||| || ||||| ||||| || ||||| || ||| Sbjct 39527 TCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 39468 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||||| | ||||||||||| ||| | Sbjct 39467 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATA 39408 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || | || || ||||| || ||||| Sbjct 39407 GTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 39373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496056087779200