Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq164 165 1e-35 seq1073 123 4e-23 >seq164 Length=162670 Score = 165 bits (182), Expect = 1e-35 Identities = 458/696 (66%), Gaps = 20/696 (3%) Strand=Plus/Minus Query 79897 CATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGA 79956 || |||| |||||||| | | ||| || || | | || |||| ||||| |||||| Sbjct 45456 CACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGA 45397 Query 79957 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 80016 ||||| |||||||| || | || ||||| | || | |||||| || || ||| Sbjct 45396 TCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTC 45337 Query 80017 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 80076 || ||||||||||||| | | | ||| | ||||| || || | ||| ||||| | Sbjct 45336 TTGCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAG 45277 Query 80077 ACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 80136 | || ||||| ||||| || || || || | || | ||||||||| || | || | | Sbjct 45276 GCACCAGGTCGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGC 45217 Query 80137 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 80196 | ||| || | | ||| ||||| || || ||||| || | ||| ||| ||| ||| | Sbjct 45216 AGCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAA 45157 Query 80197 CGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 80254 ||||| | | ||| ||||| || || || ||||| || || || | ||||| | Sbjct 45156 CGAATGCGATGGACGTTG--AGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCA-C 45100 Query 80255 GT-TTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAG 80313 || || | || || |||||||| || ||| || || |||| | | || || || Sbjct 45099 GTCTTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCAC 45040 Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 ||||| |||| || || || || || || | || || || || || || ||| Sbjct 45039 GAAGACAGTTGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAAC 44980 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATA----GCTGA---TTCTATATCCCATTG 80426 || |||| | ||||||||||| ||| ||| | || | | |||| Sbjct 44979 AGCTTGCTCGACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGT-CACCCCA--- 44924 Query 80427 ATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATT 80486 ||| || || ||||||||||| | |||||| || || || || | |||||| || Sbjct 44923 ---AATGCCAACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATC 44867 Query 80487 TATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 80546 || || | | ||| || | ||||| || || || || || || | ||| ||||| Sbjct 44866 GATCTTGAGGAGGTACGACCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTC 44807 Query 80547 TCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 80582 || ||||| | ||| |||||| ||| | ||||| Sbjct 44806 ACGGTCGTAGACAATCGCCGAGTCGAGCTCCTCCTT 44771 Score = 93.3 bits (102), Expect = 6e-14 Identities = 370/578 (64%), Gaps = 6/578 (1%) Strand=Plus/Minus Query 78708 CTTG-TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 78766 |||| |||| |||||| || ||||| || | || | || ||||| || |||||||||| Sbjct 46655 CTTGATCCACTGTGAACTGGATGGGGGCAGCAGCAGCTTGAGTACGCAGGTAGTACATTC 46596 Query 78767 CCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCG 78826 | || || ||||| || |||| || ||| ||||| || || | ||| ||| Sbjct 46595 CAGTCTTCAGACCCAGCTTCCAGCCCGCGAAGTGCATGCTGGTGATCTTGCCCATGGTCG 46536 Query 78827 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 78886 ||||| || || || || | |||||| || ||||||||||| || | ||| |||| Sbjct 46535 GATCTTTCATGTGAATGTTGAGGGATTGAGACTGGTCGATGAAGGCGCCACGGTCGGCAG 46476 Query 78887 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 78946 |||| | || || || || | ||| ||||| | || || || | ||| | | Sbjct 46475 CCATCTGTACGACGGTACGCTGGGAAATCTCCCACACCGTCTTGTACAAGGCCTTGACCT 46416 Query 78947 CTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 79003 | | || | ||| | | || |||||||| ||| || || || || | ||||| | Sbjct 46415 CGGCAGGGATGTTGGGGATGTTTTGAATGGAGCCATTCTCAGCAATGATGCGGTTCTTCA 46356 Query 79004 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 79063 | | || ||| | | ||||| | | | || || ||||| || || | Sbjct 46355 TGCCGTCGGACCACAGTCCCATCTCGACAAGGTCCTTGAGAAGCCAGGGATTGACGACCT 46296 Query 79064 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATT 79123 | || || |||| | || | || ||| || || ||| || ||||| | | | Sbjct 46295 GGAACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTGGAGGTGTAAGGTTCGAAGCACT 46236 Query 79124 CATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTAT 79183 | || || |||| ||| || | ||| ||| || ||||| || || || | | ||| | Sbjct 46235 CGTTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGCATGGGGGCAACGAGCAGACTGT 46176 Query 79184 TTCTAAGACCGT-ATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGAC 79242 | | | |||| || | |||| | ||||| | ||| ||||| ||||| || ||||| Sbjct 46175 TGCGGACGCCGTGCTGCT-TGATCTGCTCTTTCAAAGAGTCCCAGTCCCAGAGGTCAGAG 46117 Query 79243 GGGACAACATTCCAAAGATCATATTGTAGAATACCGTT 79280 || || | ||| | || || || ||||| || || Sbjct 46116 GGCTTGACGTCCCACATGTCGTACTGGAGAATCCCCTT 46079 >seq1073 Length=8604 Score = 123 bits (136), Expect = 4e-23 Identities = 153/209 (73%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || |||||| |||||| || ||||| | | || ||||| ||||| || || || Sbjct 2806 CAGGCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGG 2747 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| || |||||||| || |||||||| ||||||||||| | || || |||||| Sbjct 2746 CCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAAG 2687 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT---GTCATGT 50136 || || || || || || ||||| ||||| | || | || ||| | ||| | Sbjct 2686 ATGCCCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAAAGTGGACTTCTGGTCGTTG 2627 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTT 50165 |||||||| | ||||| ||||||||||| Sbjct 2626 ATCCACTTGAGGGCCCAGTCGGCCTTCTT 2598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718257343612640