Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq164 165 1e-35
seq1073 123 4e-23
>seq164
Length=162670
Score = 165 bits (182), Expect = 1e-35
Identities = 458/696 (66%), Gaps = 20/696 (3%)
Strand=Plus/Minus
Query 79897 CATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGA 79956
|| |||| |||||||| | | ||| || || | | || |||| ||||| ||||||
Sbjct 45456 CACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGA 45397
Query 79957 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 80016
||||| |||||||| || | || ||||| | || | |||||| || || |||
Sbjct 45396 TCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTC 45337
Query 80017 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 80076
|| ||||||||||||| | | | ||| | ||||| || || | ||| ||||| |
Sbjct 45336 TTGCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAG 45277
Query 80077 ACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 80136
| || ||||| ||||| || || || || | || | ||||||||| || | || | |
Sbjct 45276 GCACCAGGTCGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGC 45217
Query 80137 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 80196
| ||| || | | ||| ||||| || || ||||| || | ||| ||| ||| ||| |
Sbjct 45216 AGCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAA 45157
Query 80197 CGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 80254
||||| | | ||| ||||| || || || ||||| || || || | ||||| |
Sbjct 45156 CGAATGCGATGGACGTTG--AGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCA-C 45100
Query 80255 GT-TTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAG 80313
|| || | || || |||||||| || ||| || || |||| | | || || ||
Sbjct 45099 GTCTTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCAC 45040
Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373
||||| |||| || || || || || || | || || || || || || |||
Sbjct 45039 GAAGACAGTTGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAAC 44980
Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATA----GCTGA---TTCTATATCCCATTG 80426
|| |||| | ||||||||||| ||| ||| | || | | ||||
Sbjct 44979 AGCTTGCTCGACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGT-CACCCCA--- 44924
Query 80427 ATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATT 80486
||| || || ||||||||||| | |||||| || || || || | |||||| ||
Sbjct 44923 ---AATGCCAACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATC 44867
Query 80487 TATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 80546
|| || | | ||| || | ||||| || || || || || || | ||| |||||
Sbjct 44866 GATCTTGAGGAGGTACGACCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTC 44807
Query 80547 TCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 80582
|| ||||| | ||| |||||| ||| | |||||
Sbjct 44806 ACGGTCGTAGACAATCGCCGAGTCGAGCTCCTCCTT 44771
Score = 93.3 bits (102), Expect = 6e-14
Identities = 370/578 (64%), Gaps = 6/578 (1%)
Strand=Plus/Minus
Query 78708 CTTG-TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 78766
|||| |||| |||||| || ||||| || | || | || ||||| || ||||||||||
Sbjct 46655 CTTGATCCACTGTGAACTGGATGGGGGCAGCAGCAGCTTGAGTACGCAGGTAGTACATTC 46596
Query 78767 CCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCG 78826
| || || ||||| || |||| || ||| ||||| || || | ||| |||
Sbjct 46595 CAGTCTTCAGACCCAGCTTCCAGCCCGCGAAGTGCATGCTGGTGATCTTGCCCATGGTCG 46536
Query 78827 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 78886
||||| || || || || | |||||| || ||||||||||| || | ||| ||||
Sbjct 46535 GATCTTTCATGTGAATGTTGAGGGATTGAGACTGGTCGATGAAGGCGCCACGGTCGGCAG 46476
Query 78887 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 78946
|||| | || || || || | ||| ||||| | || || || | ||| | |
Sbjct 46475 CCATCTGTACGACGGTACGCTGGGAAATCTCCCACACCGTCTTGTACAAGGCCTTGACCT 46416
Query 78947 CTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 79003
| | || | ||| | | || |||||||| ||| || || || || | ||||| |
Sbjct 46415 CGGCAGGGATGTTGGGGATGTTTTGAATGGAGCCATTCTCAGCAATGATGCGGTTCTTCA 46356
Query 79004 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 79063
| | || ||| | | ||||| | | | || || ||||| || || |
Sbjct 46355 TGCCGTCGGACCACAGTCCCATCTCGACAAGGTCCTTGAGAAGCCAGGGATTGACGACCT 46296
Query 79064 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATT 79123
| || || |||| | || | || ||| || || ||| || ||||| | | |
Sbjct 46295 GGAACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTGGAGGTGTAAGGTTCGAAGCACT 46236
Query 79124 CATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTAT 79183
| || || |||| ||| || | ||| ||| || ||||| || || || | | ||| |
Sbjct 46235 CGTTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGCATGGGGGCAACGAGCAGACTGT 46176
Query 79184 TTCTAAGACCGT-ATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGAC 79242
| | | |||| || | |||| | ||||| | ||| ||||| ||||| || |||||
Sbjct 46175 TGCGGACGCCGTGCTGCT-TGATCTGCTCTTTCAAAGAGTCCCAGTCCCAGAGGTCAGAG 46117
Query 79243 GGGACAACATTCCAAAGATCATATTGTAGAATACCGTT 79280
|| || | ||| | || || || ||||| || ||
Sbjct 46116 GGCTTGACGTCCCACATGTCGTACTGGAGAATCCCCTT 46079
>seq1073
Length=8604
Score = 123 bits (136), Expect = 4e-23
Identities = 153/209 (73%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019
|| || |||||| |||||| || ||||| | | || ||||| ||||| || || ||
Sbjct 2806 CAGGCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGG 2747
Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079
|| ||||| || |||||||| || |||||||| ||||||||||| | || || ||||||
Sbjct 2746 CCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAAG 2687
Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT---GTCATGT 50136
|| || || || || || ||||| ||||| | || | || ||| | ||| |
Sbjct 2686 ATGCCCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAAAGTGGACTTCTGGTCGTTG 2627
Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTT 50165
|||||||| | ||||| |||||||||||
Sbjct 2626 ATCCACTTGAGGGCCCAGTCGGCCTTCTT 2598
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718257343612640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |