Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq164 138 2e-27 seq1073 104 3e-17 >seq164 Length=162670 Score = 138 bits (152), Expect = 2e-27 Identities = 452/696 (65%), Gaps = 20/696 (3%) Strand=Plus/Minus Query 71980 CATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGA 72039 || || || |||||||| | | ||| || || | | | |||| ||||| |||||| Sbjct 45456 CACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGA 45397 Query 72040 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 72099 ||||| |||||||| || | || ||||| | || | |||||| || || ||| Sbjct 45396 TCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTC 45337 Query 72100 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 72159 || ||||||||||||| | | | ||| | ||||| || || | ||| ||||| | Sbjct 45336 TTGCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAG 45277 Query 72160 ACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 72219 | || || || ||||| || || || || | || | ||||||||| || | || | | Sbjct 45276 GCACCAGGTCGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGC 45217 Query 72220 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 72279 | ||| || | | ||| ||||| | || ||||| || | ||| ||| ||| ||| | Sbjct 45216 AGCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAA 45157 Query 72280 CGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 72337 ||||| || ||| ||||| || || || ||||| || || || | ||||| | Sbjct 45156 CGAATGCGATGGACGTTG--AGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCA-C 45100 Query 72338 GT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 72396 || || | || || |||||||| || || || ||| |||| | | || || || Sbjct 45099 GTCTTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCAC 45040 Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 ||||| |||| || || || || || || | || || || || || || ||| Sbjct 45039 GAAGACAGTTGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAAC 44980 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATA----GCTGA---TTCTATATCCCATTG 72509 || |||| | ||||||||||| ||| ||| | || | | |||| Sbjct 44979 AGCTTGCTCGACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGT-CACCCCA--- 44924 Query 72510 ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATT 72569 || || || ||||||||||| | ||| || || || || || | |||||| || Sbjct 44923 ---AATGCCAACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATC 44867 Query 72570 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 72629 || || | | ||| || | ||||| || || || || || || | ||| ||||| Sbjct 44866 GATCTTGAGGAGGTACGACCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTC 44807 Query 72630 TCGTTCGTAAATAATAACCGAATTGAGTTTATCCTT 72665 || ||||| | ||| |||| | ||| | ||||| Sbjct 44806 ACGGTCGTAGACAATCGCCGAGTCGAGCTCCTCCTT 44771 >seq1073 Length=8604 Score = 104 bits (114), Expect = 3e-17 Identities = 150/210 (71%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || |||||| |||||| || || || | | || | ||| ||||| || || || Sbjct 2806 CAGGCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGG 2747 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||| || |||||||| || |||||||| || |||||||| | || || |||||| Sbjct 2746 CCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAAG 2687 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT----GTCATG 42240 || || || || || || ||||| | ||| | || | || || ||| ||| | Sbjct 2686 ATGCCCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAAAGTGG-ACTTCTGGTCGTT 2628 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTT 42270 |||||||| | ||||| ||||||||||| Sbjct 2627 GATCCACTTGAGGGCCCAGTCGGCCTTCTT 2598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671128495329760