Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1073 138 2e-27 seq164 131 2e-25 seq410 107 3e-18 >seq1073 Length=8604 Score = 138 bits (152), Expect = 2e-27 Identities = 321/474 (68%), Gaps = 25/474 (5%) Strand=Plus/Plus Query 125390 GTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGA 125449 ||||||| | ||| | ||||| | | ||| | | || || || ||||| || || || Sbjct 2621 GTGGATCAACGACCAGAAGTCCACTTTCGCTCAGCGTCTTGTCGCCTTCGCTGCTGTTGA 2680 Query 125450 GGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCAT 125509 |||||||||||| || ||| |||||| |||||||||||||||||||||| || ||||| Sbjct 2681 GGGCATCTTCTTCTCCGGTGCCTTTGCGTCCATCTTTTGGCTCAAGAAGCGTGGTCTCAT 2740 Query 125510 GCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT 125569 ||| || ||||| | || || | || ||||| ||||| || || ||| || || Sbjct 2741 GCCTGGCCTGACCTTCTCCAATGAACTCATCTCTCGCGACGAAGGACTGCACACCGATTT 2800 Query 125570 TGCCATTCTACTGT-TTCGCAACT--ATCTGCGTCCC-GAGTGCAGATCCAGCGATGAAA 125625 |||| || || | || || || | | || ||| | |||| || || Sbjct 2801 TGCCTGCCTGCTCTACTCCCACCTGAAGCACCGCCCCAGCAAGCAGGTCATCCG------ 2854 Query 125626 AGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCC 125685 || ||| |||||| ||| ||||| | ||| || || ||||| || ||||| | | Sbjct 2855 -GGACAT---CATTGT---CGACGCCGTCAAGATTGAGCAGGAGTTCCTCACCGAGGCTC 2907 Query 125686 TACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGG 125745 | || | | | | || ||||| | ||| || ||| ||||||| || ||||||| Sbjct 2908 TGCCCTGCGGTCTCCTCGGGATGAATTCCAACCTCATGAAGCAGTACATTGAATTTGTGG 2967 Query 125746 CAGATCGTCTACTG--TACGAGTTG-ATTGGCCGCAAGATTTACAACGCCAAG-AATCCC 125801 | || ||||| ||| ||| | | || ||| | ||||| | |||| |||||| Sbjct 2968 CCGACCGTCTGCTGGTTACCCTCGGCAATG---AAAAGGTCTACAA-GTCAAGCAATCCC 3023 Query 125802 TTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 ||||| || ||| | ||| || || | || ||||||||||| || |||||| Sbjct 3024 TTTGACTTTATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTTGAGAAG 3077 >seq164 Length=162670 Score = 131 bits (144), Expect = 2e-25 Identities = 325/487 (67%), Gaps = 10/487 (2%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 || ||||| || || || || || || | ||| ||||| | || || |||||||| || Sbjct 45251 CAAGGCGGTAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCCTGGCACGCCGAT 45310 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || |||| | ||||| ||| ||| || |||| || ||| | || Sbjct 45311 GTCTTCGAGTTCCTCGATCTTCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCCCGCGAT 45370 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AACGACGGTGGC 97052 | || || || ||| | || ||| | ||||||||| | ||| || |||||| Sbjct 45371 CTTTTCCTCGCCCTTTGGATCCCTGATCTCTTCATGAAGAGAGTCGAGAAGAACGGTG-- 45428 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||||| || ||||| ||| || || |||| || |||| || | ||||| ||| Sbjct 45429 -ACTGGACTCTCATGTGTCCCAACGAGTGCTCCGGCCTCGCCGACTGTTACGGCGAGGAG 45487 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGG-CCGATACGTGAGACGAGTCGATGC 97171 |||||||| |||| | ||||||| ||||| | || |||| | || | || Sbjct 45488 TTTGAGGCGTTGTACGAGAAGTACGAGCGCGAGGGTAAGGGTCGCAAGACCA-TCAAGGC 45546 Query 97172 ACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTC 97230 | |||| |||||| | |||||| | ||| ||| ||||| || | || | ||| | Sbjct 45547 -CCAGAAGCTGTGGTACGCCATCCTTGAGGCGCAGACGGAGACGGGCAACCCCTTCATGC 45605 Query 97231 TCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCT 97290 | |||||||| ||| || ||||| |||||||| || | || |||||| ||| Sbjct 45606 TGTACAAGGACGCCGCCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCCGCAGCT 45665 Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTC 97350 |||| || ||||| ||||| | |||||| | | || || ||| || || ||| | Sbjct 45666 CCAACCTTTGCACTGAAATCATCGAGTACTCGGCGCCTGATGAGGTTGCCGTCTGCAACC 45725 Query 97351 TGGCATC 97357 |||| || Sbjct 45726 TGGCTTC 45732 >seq410 Length=292899 Score = 107 bits (118), Expect = 3e-18 Identities = 181/256 (71%), Gaps = 7/256 (3%) Strand=Plus/Plus Query 70044 TCGGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGC 70103 ||||| | || || | ||| |||||||| || || |||||||| ||||| ||| ||| Sbjct 35482 TCGGCCTTTCCCACCGCGAAGTCGGCGATCTCGGCCCCGTGTACGGCTTCCAATGGCGGC 35541 Query 70104 ACTCGGGCACCAAGTATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAAT 70163 ||| ||| || |||| || ||| | |||| |||||| |||| ||||| || || ||| Sbjct 35542 ACTTCGGCGCCGAGTACGTCGACGCCAAGACGGACTATACGGGCCAGGGCGTCGACCAAC 35601 Query 70164 TG-CAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGC 70222 || | || ||||| | | |||||||| || || || | ||||| | || || Sbjct 35602 TGGCCGAGG-TCATTCAAAAACTCAAGACGAACCCGTACGACCGCCGGATCCTGCTGAGC 35660 Query 70223 TCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCA 70281 | ||||| || || || || | | ||||| || || || || ||| |||||| |||| Sbjct 35661 GCGTGGAACCCCGCGGACCTGAAGAAGATGGCGCTCCCGCCCTGCCACATGTTTG-CTCA 35719 Query 70282 GTTTTA---CTCGTAC 70294 |||||| ||||||| Sbjct 35720 GTTTTACGTCTCGTAC 35735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741047380105760