Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq1073 138 2e-27
seq164 131 2e-25
seq410 107 3e-18
>seq1073
Length=8604
Score = 138 bits (152), Expect = 2e-27
Identities = 321/474 (68%), Gaps = 25/474 (5%)
Strand=Plus/Plus
Query 125390 GTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGA 125449
||||||| | ||| | ||||| | | ||| | | || || || ||||| || || ||
Sbjct 2621 GTGGATCAACGACCAGAAGTCCACTTTCGCTCAGCGTCTTGTCGCCTTCGCTGCTGTTGA 2680
Query 125450 GGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCAT 125509
|||||||||||| || ||| |||||| |||||||||||||||||||||| || |||||
Sbjct 2681 GGGCATCTTCTTCTCCGGTGCCTTTGCGTCCATCTTTTGGCTCAAGAAGCGTGGTCTCAT 2740
Query 125510 GCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT 125569
||| || ||||| | || || | || ||||| ||||| || || ||| || ||
Sbjct 2741 GCCTGGCCTGACCTTCTCCAATGAACTCATCTCTCGCGACGAAGGACTGCACACCGATTT 2800
Query 125570 TGCCATTCTACTGT-TTCGCAACT--ATCTGCGTCCC-GAGTGCAGATCCAGCGATGAAA 125625
|||| || || | || || || | | || ||| | |||| || ||
Sbjct 2801 TGCCTGCCTGCTCTACTCCCACCTGAAGCACCGCCCCAGCAAGCAGGTCATCCG------ 2854
Query 125626 AGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCC 125685
|| ||| |||||| ||| ||||| | ||| || || ||||| || ||||| | |
Sbjct 2855 -GGACAT---CATTGT---CGACGCCGTCAAGATTGAGCAGGAGTTCCTCACCGAGGCTC 2907
Query 125686 TACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGG 125745
| || | | | | || ||||| | ||| || ||| ||||||| || |||||||
Sbjct 2908 TGCCCTGCGGTCTCCTCGGGATGAATTCCAACCTCATGAAGCAGTACATTGAATTTGTGG 2967
Query 125746 CAGATCGTCTACTG--TACGAGTTG-ATTGGCCGCAAGATTTACAACGCCAAG-AATCCC 125801
| || ||||| ||| ||| | | || ||| | ||||| | |||| ||||||
Sbjct 2968 CCGACCGTCTGCTGGTTACCCTCGGCAATG---AAAAGGTCTACAA-GTCAAGCAATCCC 3023
Query 125802 TTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855
||||| || ||| | ||| || || | || ||||||||||| || ||||||
Sbjct 3024 TTTGACTTTATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTTGAGAAG 3077
>seq164
Length=162670
Score = 131 bits (144), Expect = 2e-25
Identities = 325/487 (67%), Gaps = 10/487 (2%)
Strand=Plus/Plus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
|| ||||| || || || || || || | ||| ||||| | || || |||||||| ||
Sbjct 45251 CAAGGCGGTAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCCTGGCACGCCGAT 45310
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| || || || |||| | ||||| ||| ||| || |||| || ||| | ||
Sbjct 45311 GTCTTCGAGTTCCTCGATCTTCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCCCGCGAT 45370
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AACGACGGTGGC 97052
| || || || ||| | || ||| | ||||||||| | ||| || ||||||
Sbjct 45371 CTTTTCCTCGCCCTTTGGATCCCTGATCTCTTCATGAAGAGAGTCGAGAAGAACGGTG-- 45428
Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112
|||||| || ||||| ||| || || |||| || |||| || | ||||| |||
Sbjct 45429 -ACTGGACTCTCATGTGTCCCAACGAGTGCTCCGGCCTCGCCGACTGTTACGGCGAGGAG 45487
Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGG-CCGATACGTGAGACGAGTCGATGC 97171
|||||||| |||| | ||||||| ||||| | || |||| | || | ||
Sbjct 45488 TTTGAGGCGTTGTACGAGAAGTACGAGCGCGAGGGTAAGGGTCGCAAGACCA-TCAAGGC 45546
Query 97172 ACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTC 97230
| |||| |||||| | |||||| | ||| ||| ||||| || | || | ||| |
Sbjct 45547 -CCAGAAGCTGTGGTACGCCATCCTTGAGGCGCAGACGGAGACGGGCAACCCCTTCATGC 45605
Query 97231 TCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCT 97290
| |||||||| ||| || ||||| |||||||| || | || |||||| |||
Sbjct 45606 TGTACAAGGACGCCGCCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCCGCAGCT 45665
Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTC 97350
|||| || ||||| ||||| | |||||| | | || || ||| || || ||| |
Sbjct 45666 CCAACCTTTGCACTGAAATCATCGAGTACTCGGCGCCTGATGAGGTTGCCGTCTGCAACC 45725
Query 97351 TGGCATC 97357
|||| ||
Sbjct 45726 TGGCTTC 45732
>seq410
Length=292899
Score = 107 bits (118), Expect = 3e-18
Identities = 181/256 (71%), Gaps = 7/256 (3%)
Strand=Plus/Plus
Query 70044 TCGGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGC 70103
||||| | || || | ||| |||||||| || || |||||||| ||||| ||| |||
Sbjct 35482 TCGGCCTTTCCCACCGCGAAGTCGGCGATCTCGGCCCCGTGTACGGCTTCCAATGGCGGC 35541
Query 70104 ACTCGGGCACCAAGTATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAAT 70163
||| ||| || |||| || ||| | |||| |||||| |||| ||||| || || |||
Sbjct 35542 ACTTCGGCGCCGAGTACGTCGACGCCAAGACGGACTATACGGGCCAGGGCGTCGACCAAC 35601
Query 70164 TG-CAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGC 70222
|| | || ||||| | | |||||||| || || || | ||||| | || ||
Sbjct 35602 TGGCCGAGG-TCATTCAAAAACTCAAGACGAACCCGTACGACCGCCGGATCCTGCTGAGC 35660
Query 70223 TCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCA 70281
| ||||| || || || || | | ||||| || || || || ||| |||||| ||||
Sbjct 35661 GCGTGGAACCCCGCGGACCTGAAGAAGATGGCGCTCCCGCCCTGCCACATGTTTG-CTCA 35719
Query 70282 GTTTTA---CTCGTAC 70294
|||||| |||||||
Sbjct 35720 GTTTTACGTCTCGTAC 35735
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741047380105760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |