Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq245 82.4 6e-11 >seq245 Length=397273 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| |||||| ||||||||||| ||||| |||||||| | | || | ||||| Sbjct 356459 CACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGTAATCGGAGAGCGTGCGACCATCCTC 356518 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || ||||| || || | || || | |||||| || || | ||||| ||||| Sbjct 356519 AAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTG 356578 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| ||| || || | | ||| ||||| || ||| || | |||||||| || Sbjct 356579 AATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGACCTCCAAAGTAATGGTCTT 356638 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||| ||||| ||||| ||||| Sbjct 356639 GCCGGTCAGAGTCTTGACGAAAATCTGCAT 356668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414566352874744