Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq537 118 9e-22 >seq537 Length=40295 Score = 118 bits (130), Expect = 9e-22 Identities = 193/272 (71%), Gaps = 12/272 (4%) Strand=Plus/Minus Query 99502 CGCCCCCAGCCCAGGCTGGCGTGCGAGCCCGGCGCCCCGCTCCGCACGGTGAGCGAGGTG 99561 ||| ||||||| || ||| ||| ||| || | | | || ||||| || | ||| Sbjct 16071 CGCTCCCAGCCGCGGTTGGAGTGGGAGTTCGCCTCGTGGGCGCGGACGGTTAGGCACGTG 16012 Query 99562 TTGAGCAGCAGCACGCCGCGGCGCGCCCAGGCCTC---CAGGCAGCCGTGCTGCGGCCGC 99618 ||||| || || ||||||| | ||||||| ||||| ||||| || ||| || Sbjct 16011 TTGAGAAGGAGAACGCCGCAGTCGGCCCAGGGTGTGAGCAGGCCGCCGTTCTTGGGCGGC 15952 Query 99619 GGGGTCCCGG---GGAAGTTCTT-CTGCACGGCCGCGTAGATGTTCTGGAGGCTGGGCGG 99674 |||| || || ||| ||| ||| | ||| ||| ||||||| ||| |||||| Sbjct 15951 GGGGAGAAGGTCGGGTAGTCCTTTCTG-AGGGCGATGTACATGTTCTTGAGCGAGGGCGG 15893 Query 99675 GATCGGAACGCCGCGGTTC--ACGCTGAAGGCCAGGCCGTGGGCCTGCCCGTGGCTGTGG 99732 | ||| | || || | ||| |||||| |||||||||||||| |||| ||||| Sbjct 15892 GGCCGGG--GTCGGGGGCCGGACGGAGAAGGCGAGGCCGTGGGCCTGGTTGTGGTTGTGG 15835 Query 99733 TAGGGGTCCTGGCCCAGGATGACGACCTTGAC 99764 |||||||||||||| ||||||||||||||||| Sbjct 15834 TAGGGGTCCTGGCCGAGGATGACGACCTTGAC 15803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440892167657760