Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_005261.2
Length=137821
Score E
Sequences producing significant alignments: (Bits) Value
seq537 118 9e-22
>seq537
Length=40295
Score = 118 bits (130), Expect = 9e-22
Identities = 193/272 (71%), Gaps = 12/272 (4%)
Strand=Plus/Minus
Query 99502 CGCCCCCAGCCCAGGCTGGCGTGCGAGCCCGGCGCCCCGCTCCGCACGGTGAGCGAGGTG 99561
||| ||||||| || ||| ||| ||| || | | | || ||||| || | |||
Sbjct 16071 CGCTCCCAGCCGCGGTTGGAGTGGGAGTTCGCCTCGTGGGCGCGGACGGTTAGGCACGTG 16012
Query 99562 TTGAGCAGCAGCACGCCGCGGCGCGCCCAGGCCTC---CAGGCAGCCGTGCTGCGGCCGC 99618
||||| || || ||||||| | ||||||| ||||| ||||| || ||| ||
Sbjct 16011 TTGAGAAGGAGAACGCCGCAGTCGGCCCAGGGTGTGAGCAGGCCGCCGTTCTTGGGCGGC 15952
Query 99619 GGGGTCCCGG---GGAAGTTCTT-CTGCACGGCCGCGTAGATGTTCTGGAGGCTGGGCGG 99674
|||| || || ||| ||| ||| | ||| ||| ||||||| ||| ||||||
Sbjct 15951 GGGGAGAAGGTCGGGTAGTCCTTTCTG-AGGGCGATGTACATGTTCTTGAGCGAGGGCGG 15893
Query 99675 GATCGGAACGCCGCGGTTC--ACGCTGAAGGCCAGGCCGTGGGCCTGCCCGTGGCTGTGG 99732
| ||| | || || | ||| |||||| |||||||||||||| |||| |||||
Sbjct 15892 GGCCGGG--GTCGGGGGCCGGACGGAGAAGGCGAGGCCGTGGGCCTGGTTGTGGTTGTGG 15835
Query 99733 TAGGGGTCCTGGCCCAGGATGACGACCTTGAC 99764
|||||||||||||| |||||||||||||||||
Sbjct 15834 TAGGGGTCCTGGCCGAGGATGACGACCTTGAC 15803
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 440892167657760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |