Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq245 123 2e-23
seq63 84.2 2e-11
>seq245
Length=397273
Score = 123 bits (136), Expect = 2e-23
Identities = 173/241 (72%), Gaps = 4/241 (2%)
Strand=Plus/Plus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| ||| || ||||| | | || | |||||||||||||||||| ||||| || | |
Sbjct 356430 AAAATTTGCATACCTCCGCGGAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTCTGAATG 356489
Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886
|| |||||| | || || || |||||| || ||||||||| | ||||| | | |
Sbjct 356490 TTGTAATCG--GAGAGCGTGCGACCATCCTCAAGTTGTTTTCCGGCGAAGATGAGACGCT 356547
Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946
|||| || ||||||||||| || ||||| | ||| || | ||||||| | ||| || |
Sbjct 356548 GCTGGTCAGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTAT 356607
Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006
| | ||||| || | || ||||| || || || ||||| || || || |||||||
Sbjct 356608 CCGAAGACTCGACCTCCAAAGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCA 356667
Query 95007 T 95007
|
Sbjct 356668 T 356668
>seq63
Length=145700
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/219 (68%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|||| ||||| ||| | || || ||||| || | ||| || ||| || ||| |
Sbjct 39587 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCG 39528
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||| ||||| || ||| | ||||| || | ||||| || || || || || || |||
Sbjct 39527 TCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 39468
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || | |||||| | ||| ||||| | || || |||| |||||
Sbjct 39467 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATA 39408
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011
|| || || || || || || || |||||||||||| ||
Sbjct 39407 GTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATGATT 39369
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448284049755360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |