Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq142 107 3e-19 seq302 100 4e-17 >seq142 Length=327608 Score = 107 bits (118), Expect = 3e-19 Identities = 86/101 (85%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| | | || || |||||||| || ||||||||||| ||||| Sbjct 94287 GCCAAGCGTCACCGCAAGATTT-TGCGTGACAACATCCAGGGTATCACCAAGCCCGCTAT 94229 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||||||||| |||||||||||||| ||||||||| | |||| Sbjct 94228 CCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 94188 >seq302 Length=118434 Score = 100 bits (110), Expect = 4e-17 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || || | || | ||| ||||| ||||||| || || |||| |||| Sbjct 101014 TGATCTACGAGGAAACCCGCGGCGTTCTGAAGTCCTTCCTCGAGGGTGTCATCCGAGATG 101073 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 || || |||||| ||||||||||| ||||||||||| || ||| | || ||||||| | Sbjct 101074 CTGTCACCTATACTGAGCACGCTAAGCGTAAGACTGTTACGTCCCTCGACGTCGTCTACG 101133 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 | |||| || |||||||| | | || |||||||| | || | |||| Sbjct 101134 CGCTGAAGCGCCAAGGCCGCACCCTGTACGGTTTTGGTGGCTAGTTTTCT 101183 Score = 96.9 bits (106), Expect = 5e-16 Identities = 84/102 (82%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| ||| || |||||||| || || ||||| || || |||| Sbjct 100847 CGCCAAGCGTCACCGCAAGAT-TCTGCGTGATAACATTCAGGGCATCACTAAACCCGCTA 100905 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||||||| || ||||||||||| || ||||||||| | |||| Sbjct 100906 TCCGTCGCCTCGCTCGTCGTGGCGGTGTCAAGCGTATTTCTG 100947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074033344268