Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq142 107 3e-19
seq302 100 4e-17
>seq142
Length=327608
Score = 107 bits (118), Expect = 3e-19
Identities = 86/101 (85%), Gaps = 2/101 (2%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| |||| ||| | | || || |||||||| || ||||||||||| |||||
Sbjct 94287 GCCAAGCGTCACCGCAAGATTT-TGCGTGACAACATCCAGGGTATCACCAAGCCCGCTAT 94229
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
||||||||| |||||||||||||| ||||||||| | ||||
Sbjct 94228 CCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 94188
>seq302
Length=118434
Score = 100 bits (110), Expect = 4e-17
Identities = 124/170 (73%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| || || | || | ||| ||||| ||||||| || || |||| ||||
Sbjct 101014 TGATCTACGAGGAAACCCGCGGCGTTCTGAAGTCCTTCCTCGAGGGTGTCATCCGAGATG 101073
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
|| || |||||| ||||||||||| ||||||||||| || ||| | || ||||||| |
Sbjct 101074 CTGTCACCTATACTGAGCACGCTAAGCGTAAGACTGTTACGTCCCTCGACGTCGTCTACG 101133
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705
| |||| || |||||||| | | || |||||||| | || | ||||
Sbjct 101134 CGCTGAAGCGCCAAGGCCGCACCCTGTACGGTTTTGGTGGCTAGTTTTCT 101183
Score = 96.9 bits (106), Expect = 5e-16
Identities = 84/102 (82%), Gaps = 2/102 (2%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| ||| ||| || |||||||| || || ||||| || || ||||
Sbjct 100847 CGCCAAGCGTCACCGCAAGAT-TCTGCGTGATAACATTCAGGGCATCACTAAACCCGCTA 100905
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
||||||| || ||||||||||| || ||||||||| | ||||
Sbjct 100906 TCCGTCGCCTCGCTCGTCGTGGCGGTGTCAAGCGTATTTCTG 100947
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074033344268
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |