Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq164 149 8e-31 seq1073 109 7e-19 >seq164 Length=162670 Score = 149 bits (164), Expect = 8e-31 Identities = 448/686 (65%), Gaps = 18/686 (3%) Strand=Plus/Minus Query 63183 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63242 |||||||| | | ||| || |||| | || |||| ||||| ||||||||||| ||| Sbjct 45447 GGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGATCAGGGATC 45388 Query 63243 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63302 ||||| || | || ||||| | || | ||||| || || ||||| |||| Sbjct 45387 CAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGA 45328 Query 63303 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63362 ||||||||| | | | ||| | ||||| || || | ||| ||||| | | ||||| Sbjct 45327 TCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGT 45268 Query 63363 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63422 || ||||| || || || || | || | ||||||||| || | || | || ||| || Sbjct 45267 CGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGG 45208 Query 63423 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTA 63482 | | |||||| || | || ||||| || | ||| ||| ||| ||| |||||| | Sbjct 45207 ACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAACGAATGCGA 45148 Query 63483 CTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAAC 63539 | ||| ||||| || || || ||||| || || || | ||||| ||| || | Sbjct 45147 TGGACGTTG--AGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCA-CGTCTTGAGG 45091 Query 63540 GTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT 63599 ||||| ||||| || || ||| || || |||| | | || || || ||||| | Sbjct 45090 GTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAAGACAGT 45031 Query 63600 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63659 ||| || || || || || || | || || || || || || ||| || Sbjct 45030 TGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAACAGCTTGCTC 44971 Query 63660 GAAAGTAGATTGTACGTCTCAATA----GCTGA--GTCTATATCCCATTGATGAATTCCT 63713 || | | ||||||||||| ||| ||| | || | |||| ||| || Sbjct 44970 GACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCA------AATGCCA 44917 Query 63714 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAAC 63773 || ||||||||||| | |||||| || || || || | |||||| | || || | Sbjct 44916 ACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGATCTTGAGG 44857 Query 63774 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 63833 | ||| || | ||||| || || || || || || | ||| ||||| || ||||| Sbjct 44856 AGGTACGACCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGTAG 44797 Query 63834 ATAATAACCGAGTTGAGTTTATCCTT 63859 | ||| |||||| ||| | ||||| Sbjct 44796 ACAATCGCCGAGTCGAGCTCCTCCTT 44771 Score = 82.4 bits (90), Expect = 1e-10 Identities = 134/192 (70%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 61985 CTTG-TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 62043 |||| |||| |||||| || ||||| || | || | || ||||| || |||||||||| Sbjct 46655 CTTGATCCACTGTGAACTGGATGGGGGCAGCAGCAGCTTGAGTACGCAGGTAGTACATTC 46596 Query 62044 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 62103 | || || ||||| || |||| || || ||||| || || | ||| ||| Sbjct 46595 CAGTCTTCAGACCCAGCTTCCAGCCCGCGAAGTGCATGCTGGTGATCTTGCCCATGGTCG 46536 Query 62104 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62163 ||||| || || || || | |||||| || ||||||||||| || | ||| |||| Sbjct 46535 GATCTTTCATGTGAATGTTGAGGGATTGAGACTGGTCGATGAAGGCGCCACGGTCGGCAG 46476 Query 62164 CCATTTTTATGA 62175 |||| | || || Sbjct 46475 CCATCTGTACGA 46464 >seq1073 Length=8604 Score = 109 bits (120), Expect = 7e-19 Identities = 150/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || |||||| |||||| || ||||| | | || ||||| ||||| || || || Sbjct 2806 CAGGCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGG 2747 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || |||||||| || |||||||| ||||| || || | || || |||||| Sbjct 2746 CCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAAG 2687 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATGT 33480 || || || || ||||| ||||| | ||| | || | || || | ||| | Sbjct 2686 ATGCCCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAAAGTGGACTTCTGGTCGTTG 2627 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTT 33509 |||||||| | ||||| ||||||||||| Sbjct 2626 ATCCACTTGAGGGCCCAGTCGGCCTTCTT 2598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622937263992160