Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq164 307 3e-78
seq1073 95.1 3e-14
>seq164
Length=162670
Score = 307 bits (340), Expect = 3e-78
Identities = 1063/1634 (65%), Gaps = 42/1634 (3%)
Strand=Plus/Plus
Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606
||||| || ||| |||| || ||| ||| || || || | | | | || |||||||
Sbjct 44981 TTCACCCATGCCTCGCCCACTCTGTTCAACGCCGGCACCCCTCAGGCCCAACTGTCTTCG 45040
Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666
||||| || | | |||||||| || |||||||| || |||| ||||| || ||||
Sbjct 45041 TGCTTCCTCGTCGATATGAAGGAGGACTCCATCGAAGGCATCTACGACACCCTCAAGACG 45100
Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725
|| || | |||||||||| || || || || ||| | | || |||| ||||| |
Sbjct 45101 TGCGCCATGATTTCCAAGATGGCTGGAGGCATCGGTCTCAACG-TCCATCGCATTCGTTC 45159
Query 363726 -ACAGAACAGTTACATTCGCGG-CACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783
|| | | ||||| ||||| ||| ||| ||| || || | || || |||||
Sbjct 45160 CACTGG-CTCCTACAT-CGCGGGCACCAACGGAACCTCCAACGGTGTCGTCCCTATGCTG 45217
Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843
||||| || |||| || || | || |||||||| || || ||||| || ||
Sbjct 45218 CGTGTCTTCAACAACACCGCTCGCTATGTCGACCAAGGCGGTAACAAGCGACCTGGTGCC 45277
Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903
|| || || || || ||||| || |||||| | || ||||| || || || || ||
Sbjct 45278 TTCGCCATCTACCTTGAGCCCTGGCACGCCGATGTCTTCGAGTTCCTCGATCTTCGCAAG 45337
Query 363904 AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963
||| || || ||||| | ||||| || ||||| ||| || |||||| | ||||
Sbjct 45338 AACCACGGCAAGGAGGAGGTCCGTGCCCGCGATCTTTTCCTCGCCCTTTGGATCCCTGAT 45397
Query 363964 CATTTTATGAAGCGCGTGGAGGCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAAT 364021
| || |||||| | || ||| | | | | | ||| | ||| | || || |||| |
Sbjct 45398 CTCTTCATGAAGAGAGTCGAG--AAGAACGGTGACTGGACTCTCATGTGTCCCAACGAGT 45455
Query 364022 GTCCAGGTCTTTCCGA-TGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAA 364080
| | || || |||| ||| | || || || | || || | ||||| ||||| ||
Sbjct 45456 GCTCCGGCCTCGCCGACTGT-TACGGCGAGGAGTTTGAGGCGTTGTACGAGAAGTACGAG 45514
Query 364081 TCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGAT 364140
||||| |||| ||| ||||| || || |||||||| |||| |||||| | ||
Sbjct 45515 CGCGAGGGTAAGGGTCGCAAGACCATCAAGGCCCAGAAGCTGTGGTACGCCATCCTTGAG 45574
Query 364141 TCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCC 364200
|||||| ||||| || | |||| ||| ||||||| || | |||||||||| |
Sbjct 45575 GCGCAGACGGAGACGGGCAACCCCTTCATGCTGTACAAGGACGCCGCCAACCGCAAGAGC 45634
Query 364201 AACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATA 364259
|||||| || |||| ||||| || | |||| | ||||| || || || || || || ||
Sbjct 45635 AACCAGAAGAACCTCGGTACCATCC-GCAGCTCCAACCTTTGCACTGAAATCATCGAGTA 45693
Query 364260 CACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT 364319
| | || || || ||| |||||| || ||||| || || | || || || | || ||
Sbjct 45694 CTCGGCGCCTGATGAGGTTGCCGTCTGCAACCTGGCTTCTCTGGCCCTGCCCACCTTCGT 45753
Query 364320 A------AAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTAC 364373
|| || || || | |||| |||| | | | || || ||| | ||
Sbjct 45754 TGACTACAACGAAGGCACCTATGACTTCCAGAAGTTGCACGAGGTCACCCAGGTTGTCGT 45813
Query 364374 TTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTC 364433
|||| | ||| | | || ||| || | || || ||| || ||| |||
Sbjct 45814 CCGCAACTTGAACAGGATCATTGACGTCAACCACTACCCTGTTCAGGAGGCC---CGTAA 45870
Query 364434 TA---ATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGA--CGTTT-T 364487
| | ||||| |||||||| || ||||| || || |||||||| ||||| |||| |
Sbjct 45871 CAGCAACATGCGCCATCGCCCCATCGGTCTCGGCGTCCAGGGCCTTGCTGATGCGTTCCT 45930
Query 364488 TATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTT 364547
| ||| || || | || || || |||| ||||| | || || ||| |||||||
Sbjct 45931 TGCCCTGCGCA---TGCCCTTCGAGTCTGCTGAAGCTCGAGACCTCAACAAGAAGATCTT 45987
Query 364548 TGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAA 364607
|| || || || ||||| | || || || | ||||| | | || |
Sbjct 45988 CGAGACCATCTACCACGCCGCCCTCACCATGTCCTGCCAGTTGGCGCAGGAAGAAGGCAC 46047
Query 364608 GTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAA 364667
||||| | || || || |||||| |||| |||| | |||||| || | ||| |
Sbjct 46048 CTACTCCTCGTACGAAGGCTCCCCTGTTTCCAAGGGGATTCTCCAGTACGACATGTGGGA 46107
Query 364668 TGTCACGCCATCTGTCCGATGGAACTGGGATACGCT--ACGTTCCAACGTTAAGAAGCAT 364725
|||| ||| |||| || ||| ||||||| | | | | | | | ||| ||||
Sbjct 46108 CGTCAAGCCCTCTGACCTCTGGGACTGGGACTCTTTGAAAGAGCAGA--TCAAGCAGCAC 46165
Query 364726 GGTACTCGCAAC--TCC-CTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATC 364782
|| |||||| || |||||| || ||||||||||| || ||| | |||||
Sbjct 46166 GGCGTCCGCAACAGTCTGCTCGTT---GCCCCCATGCCCACTGCAAGCACTTCGCAGATT 46222
Query 364783 CTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTT 364842
|| || |||||||||||||||||||| | || ||| | || ||||| |||||
Sbjct 46223 CTGGGCAACAACGAGTGCTTCGAACCTTACACCTCCAACATCTACCAGCGCCGCGTTCTC 46282
Query 364843 TCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTG 364902
| || || || | ||| || ||| | || ||||||| ||| ||| || |||
Sbjct 46283 GCTGGCGAGTTCCAGGTCGTCAATCCCTGGCTTCTCAAGGACCTTGTCGAGATGGGACTG 46342
Query 364903 TGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCA 364962
||| ||| ||||||||||| ||||| || | ||||| || | || ||||| ||
Sbjct 46343 TGGTCCGACGGCATGAAGAACCGCATCATTGCTGAGAATGGCTCCATTCAAAACATCCCC 46402
Query 364963 GGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACT 365022
| || | || | ||| | | ||||| || || ||||| |||||| ||| ||
Sbjct 46403 AACATCCCTGCCGAGGTCAAGGCCTTGTACAAGACGGTGTGGGAGATTTCCCAGCGTACC 46462
Query 365023 CTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTA 365082
|| | | ||||| ||||| || || || || ||| ||| || || | ||| |
Sbjct 46463 GTCGTACAGATGGCTGCCGACCGTGGCGCCTTCATCGACCAGTCTCAATCCCTCAACATT 46522
Query 365083 TTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCC 365142
||||| | || ||| | |||| | || |||||| ||| || |||||
Sbjct 46523 CACATGAAAGATCCGACCATGGGCAAGATCACCAGCATGCACTTCGCGGGCTGGAAGCTG 46582
Query 365143 GGTCTTAAGACAGG 365156
||||| ||||| ||
Sbjct 46583 GGTCTGAAGACTGG 46596
>seq1073
Length=8604
Score = 95.1 bits (104), Expect = 3e-14
Identities = 153/218 (70%), Gaps = 3/218 (1%)
Strand=Plus/Plus
Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGA-ACGTTCA--TTCGCGGAACGT 22494
|| ||||| || ||||| || || ||||| ||| | | | || || ||||| | |||
Sbjct 2598 AAGAAGGCCGACTGGGCCCTCAAGTGGATCAACGACCAGAAGTCCACTTTCGCTCAGCGT 2657
Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554
||| | || || |||| ||||| ||||| ||||| || || || ||| | ||||||
Sbjct 2658 CTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCCTTTGCGTCCATCTTT 2717
Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614
||||| || || |||| | ||||| || || || || || ||||| | || ||
Sbjct 2718 TGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTGACCTTCTCCAATGAACTCATCTCTCGC 2777
Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATA 22652
|| || || || || ||||||||||| || |||| ||
Sbjct 2778 GACGAAGGACTGCACACCGATTTTGCCTGCCTGCTCTA 2815
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303332291797832
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |