Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq164 307 3e-78 seq1073 95.1 3e-14 >seq164 Length=162670 Score = 307 bits (340), Expect = 3e-78 Identities = 1063/1634 (65%), Gaps = 42/1634 (3%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| || ||| |||| || ||| ||| || || || | | | | || ||||||| Sbjct 44981 TTCACCCATGCCTCGCCCACTCTGTTCAACGCCGGCACCCCTCAGGCCCAACTGTCTTCG 45040 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | |||||||| || |||||||| || |||| ||||| || |||| Sbjct 45041 TGCTTCCTCGTCGATATGAAGGAGGACTCCATCGAAGGCATCTACGACACCCTCAAGACG 45100 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 || || | |||||||||| || || || || ||| | | || |||| ||||| | Sbjct 45101 TGCGCCATGATTTCCAAGATGGCTGGAGGCATCGGTCTCAACG-TCCATCGCATTCGTTC 45159 Query 363726 -ACAGAACAGTTACATTCGCGG-CACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783 || | | ||||| ||||| ||| ||| ||| || || | || || ||||| Sbjct 45160 CACTGG-CTCCTACAT-CGCGGGCACCAACGGAACCTCCAACGGTGTCGTCCCTATGCTG 45217 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 ||||| || |||| || || | || |||||||| || || ||||| || || Sbjct 45218 CGTGTCTTCAACAACACCGCTCGCTATGTCGACCAAGGCGGTAACAAGCGACCTGGTGCC 45277 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903 || || || || || ||||| || |||||| | || ||||| || || || || || Sbjct 45278 TTCGCCATCTACCTTGAGCCCTGGCACGCCGATGTCTTCGAGTTCCTCGATCTTCGCAAG 45337 Query 363904 AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 ||| || || ||||| | ||||| || ||||| ||| || |||||| | |||| Sbjct 45338 AACCACGGCAAGGAGGAGGTCCGTGCCCGCGATCTTTTCCTCGCCCTTTGGATCCCTGAT 45397 Query 363964 CATTTTATGAAGCGCGTGGAGGCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAAT 364021 | || |||||| | || ||| | | | | | ||| | ||| | || || |||| | Sbjct 45398 CTCTTCATGAAGAGAGTCGAG--AAGAACGGTGACTGGACTCTCATGTGTCCCAACGAGT 45455 Query 364022 GTCCAGGTCTTTCCGA-TGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAA 364080 | | || || |||| ||| | || || || | || || | ||||| ||||| || Sbjct 45456 GCTCCGGCCTCGCCGACTGT-TACGGCGAGGAGTTTGAGGCGTTGTACGAGAAGTACGAG 45514 Query 364081 TCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGAT 364140 ||||| |||| ||| ||||| || || |||||||| |||| |||||| | || Sbjct 45515 CGCGAGGGTAAGGGTCGCAAGACCATCAAGGCCCAGAAGCTGTGGTACGCCATCCTTGAG 45574 Query 364141 TCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCC 364200 |||||| ||||| || | |||| ||| ||||||| || | |||||||||| | Sbjct 45575 GCGCAGACGGAGACGGGCAACCCCTTCATGCTGTACAAGGACGCCGCCAACCGCAAGAGC 45634 Query 364201 AACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATA 364259 |||||| || |||| ||||| || | |||| | ||||| || || || || || || || Sbjct 45635 AACCAGAAGAACCTCGGTACCATCC-GCAGCTCCAACCTTTGCACTGAAATCATCGAGTA 45693 Query 364260 CACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT 364319 | | || || || ||| |||||| || ||||| || || | || || || | || || Sbjct 45694 CTCGGCGCCTGATGAGGTTGCCGTCTGCAACCTGGCTTCTCTGGCCCTGCCCACCTTCGT 45753 Query 364320 A------AAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTAC 364373 || || || || | |||| |||| | | | || || ||| | || Sbjct 45754 TGACTACAACGAAGGCACCTATGACTTCCAGAAGTTGCACGAGGTCACCCAGGTTGTCGT 45813 Query 364374 TTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTC 364433 |||| | ||| | | || ||| || | || || ||| || ||| ||| Sbjct 45814 CCGCAACTTGAACAGGATCATTGACGTCAACCACTACCCTGTTCAGGAGGCC---CGTAA 45870 Query 364434 TA---ATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGA--CGTTT-T 364487 | | ||||| |||||||| || ||||| || || |||||||| ||||| |||| | Sbjct 45871 CAGCAACATGCGCCATCGCCCCATCGGTCTCGGCGTCCAGGGCCTTGCTGATGCGTTCCT 45930 Query 364488 TATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTT 364547 | ||| || || | || || || |||| ||||| | || || ||| ||||||| Sbjct 45931 TGCCCTGCGCA---TGCCCTTCGAGTCTGCTGAAGCTCGAGACCTCAACAAGAAGATCTT 45987 Query 364548 TGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAA 364607 || || || || ||||| | || || || | ||||| | | || | Sbjct 45988 CGAGACCATCTACCACGCCGCCCTCACCATGTCCTGCCAGTTGGCGCAGGAAGAAGGCAC 46047 Query 364608 GTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAA 364667 ||||| | || || || |||||| |||| |||| | |||||| || | ||| | Sbjct 46048 CTACTCCTCGTACGAAGGCTCCCCTGTTTCCAAGGGGATTCTCCAGTACGACATGTGGGA 46107 Query 364668 TGTCACGCCATCTGTCCGATGGAACTGGGATACGCT--ACGTTCCAACGTTAAGAAGCAT 364725 |||| ||| |||| || ||| ||||||| | | | | | | | ||| |||| Sbjct 46108 CGTCAAGCCCTCTGACCTCTGGGACTGGGACTCTTTGAAAGAGCAGA--TCAAGCAGCAC 46165 Query 364726 GGTACTCGCAAC--TCC-CTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATC 364782 || |||||| || |||||| || ||||||||||| || ||| | ||||| Sbjct 46166 GGCGTCCGCAACAGTCTGCTCGTT---GCCCCCATGCCCACTGCAAGCACTTCGCAGATT 46222 Query 364783 CTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTT 364842 || || |||||||||||||||||||| | || ||| | || ||||| ||||| Sbjct 46223 CTGGGCAACAACGAGTGCTTCGAACCTTACACCTCCAACATCTACCAGCGCCGCGTTCTC 46282 Query 364843 TCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTG 364902 | || || || | ||| || ||| | || ||||||| ||| ||| || ||| Sbjct 46283 GCTGGCGAGTTCCAGGTCGTCAATCCCTGGCTTCTCAAGGACCTTGTCGAGATGGGACTG 46342 Query 364903 TGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCA 364962 ||| ||| ||||||||||| ||||| || | ||||| || | || ||||| || Sbjct 46343 TGGTCCGACGGCATGAAGAACCGCATCATTGCTGAGAATGGCTCCATTCAAAACATCCCC 46402 Query 364963 GGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACT 365022 | || | || | ||| | | ||||| || || ||||| |||||| ||| || Sbjct 46403 AACATCCCTGCCGAGGTCAAGGCCTTGTACAAGACGGTGTGGGAGATTTCCCAGCGTACC 46462 Query 365023 CTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTA 365082 || | | ||||| ||||| || || || || ||| ||| || || | ||| | Sbjct 46463 GTCGTACAGATGGCTGCCGACCGTGGCGCCTTCATCGACCAGTCTCAATCCCTCAACATT 46522 Query 365083 TTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCC 365142 ||||| | || ||| | |||| | || |||||| ||| || ||||| Sbjct 46523 CACATGAAAGATCCGACCATGGGCAAGATCACCAGCATGCACTTCGCGGGCTGGAAGCTG 46582 Query 365143 GGTCTTAAGACAGG 365156 ||||| ||||| || Sbjct 46583 GGTCTGAAGACTGG 46596 >seq1073 Length=8604 Score = 95.1 bits (104), Expect = 3e-14 Identities = 153/218 (70%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGA-ACGTTCA--TTCGCGGAACGT 22494 || ||||| || ||||| || || ||||| ||| | | | || || ||||| | ||| Sbjct 2598 AAGAAGGCCGACTGGGCCCTCAAGTGGATCAACGACCAGAAGTCCACTTTCGCTCAGCGT 2657 Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554 ||| | || || |||| ||||| ||||| ||||| || || || ||| | |||||| Sbjct 2658 CTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCCTTTGCGTCCATCTTT 2717 Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614 ||||| || || |||| | ||||| || || || || || ||||| | || || Sbjct 2718 TGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTGACCTTCTCCAATGAACTCATCTCTCGC 2777 Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATA 22652 || || || || || ||||||||||| || |||| || Sbjct 2778 GACGAAGGACTGCACACCGATTTTGCCTGCCTGCTCTA 2815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303332291797832