Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq164 201 1e-46 seq63 143 3e-29 seq245 131 2e-25 seq1073 118 1e-21 seq663 105 6e-18 >seq164 Length=162670 Score = 201 bits (222), Expect = 1e-46 Identities = 929/1448 (64%), Gaps = 41/1448 (3%) Strand=Plus/Minus Query 145056 GATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGG 145115 ||||||||||||| |||||||| || | || || ||| || | ||| || ||| | | Sbjct 46307 GATTGACGACCTGGAACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTGGAGGTGTAAG 46248 Query 145116 GTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCA 145175 |||| || ||||||| |||||||| || || | || |||| ||||||||| || | Sbjct 46247 GTTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGCATGGGGGCAA 46188 Query 145176 CCA--ATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATC 145233 | | | | || ||||| | |||||||| |||||| | || || | | |||| || Sbjct 46187 CGAGCAGACTG--TTGCGGACGCCGTGCTGCTTGATCTGCTCTTTCAAAGAGTCCCAGTC 46130 Query 145234 CCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGG 145293 ||| || || ||| | |||||||||||||||||||| | ||| |||| | | || Sbjct 46129 CCAGAGGTCAGAGGGCTTGACGTCCCACATGTCGTACTGGAGAATCCCCTTGGAAACAGG 46070 Query 145294 GCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAG 145353 | ||||| | || ||| |||| | || | || ||| | || Sbjct 46069 GGAGCCTTCGTACGAGGAGTAGGTGCCTTCTTCCTGCGCCAACTGGCAGGACATGGTGAG 46010 Query 145354 AGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATC--GCTTCATCGCTC 145411 ||| || || || |||||| || | | ||||||| | || |||||| | | Sbjct 46009 GGCGGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAG--GTCTCGAGCTTCAGCAGAC 45952 Query 145412 TCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATG 145471 ||| | ||||||||||| | || ||||| || || ||||| | || | |||||| Sbjct 45951 TCGAAGGGCATGCGCAGGGCAAGGAACGCATCAGCAAGGCCCTGGACGCCGAGACCGATG 45892 Query 145472 GGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATA 145531 || ||||| ||||||||| | | ||| || | ||| || | || ||| || Sbjct 45891 GGGCGATGGCGCATGTTGCTGTTACGGGCCTCCTGAACAGGGTAGTGGTTGACGTCAATG 45832 Query 145532 ATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAAC 145591 || | |||||||| || || || |||| || | | ||||||| | |||||| | Sbjct 45831 ATCCTGTTCAAGTTGCGGACGACAACCTGGGTGACCTCGTGCAACTTCTGGAAGTCATA- 45773 Query 145592 CGAGCC-TCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGC 145650 | ||| |||| | | || || | | ||| | || |||| || || || || Sbjct 45772 GGTGCCTTCGTTGTAGTCAACGAAGGTGGGCAGGGCCAGAGAAGCCAGGTTGCAGACGGC 45713 Query 145651 CGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGG 145709 ||| || |||| || ||| | | ||| || | ||| | ||| | ||||| Sbjct 45712 AACCTCATCAGGCGCCG-AGTACTCGATGATTTCAGTGCAAAGGTTGGAGCTGCGGATGG 45654 Query 145710 TTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTC 145769 | || || || | ||| || || || | |||| ||||||||||| |||||| | || Sbjct 45653 TACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGCATGAAGGGGT 45594 Query 145770 CGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTGCGCACGCACCTG 145827 ||| |||||| ||||| ||| | ||| || || || | ||| || | || Sbjct 45593 TGCCCGTCTCCGTCTGCGCCTCAAGGAT--GGCGTACCACAGCTTCTGGGC-----CTTG 45541 Query 145828 CTGCTGGTAGCGGCCCT---CTTC---TTCGTATTTCCTGTAGAGCTCCTCAAACGCGGA 145881 || | | ||| |||| | || ||||| ||| ||| | | |||||||| | Sbjct 45540 ATGGT-CTTGCGACCCTTACCCTCGCGCTCGTACTTCTCGTACAACGCCTCAAACTCCTC 45482 Query 145882 ACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTT 145941 ||||| || |||| ||||||| |||| |||||||||||| || | ||| | ||||| Sbjct 45481 GCCGTAACAGTCGGCGAGGCCGGAGCACTCGTTGGGACACATGAGAGTCCAGTCACCGTT 45422 Query 145942 GGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGC 146001 | ||| | || ||| || | ||| || | ||| || ||| | | ||||| || Sbjct 45421 CTTCTCGACTCTCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGC 45362 Query 146002 TTTGCAATCCTCAGCACCCATGTT-TCGCTTCAAATTAAGCACACTATAGATGTCCGCGT 146060 | ||||| || ||| | || | | | || | | ||| || |||| Sbjct 45361 ACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGATCGAGGAACTCGA-AGACATCGGCGT 45303 Query 146061 GCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTGGTCCACGT 146117 |||| || |||| |||| ||||| ||| || ||| ||| || || ||||| || | Sbjct 45302 GCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTACCGCCTTGGTCGACAT 45243 Query 146118 GACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCG 146177 || | ||||||| ||||| |||| ||| || |||| ||| ||| ||||| | Sbjct 45242 AGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGGACGACACCGTTGGAGGTTCCGTTGG 45183 Query 146178 TAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC-G 146236 | || || ||| ||| || | || ||| || || | |||| || || | Sbjct 45182 TGCCCGCGATGTAGGAGCCAGTGGAACGAATGCGATGGACGTTGAGACCGATGCCTCCAG 45123 Query 146237 CCGTACTTGGATATAGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATC 146295 || | |||||| || |||||| ||| ||| || ||||||||||| || ||| || Sbjct 45122 CCAT-CTTGGAAATCATGGCGCACGTC-TTGAGGGTGTCGTAGATGCCTTCGATGGAGTC 45065 Query 146296 --GCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAG 146353 |||| || ||| || |||||||| ||| || ||| || || || || | Sbjct 45064 CTCCTTC--ATATCGACGAGGAAGCACGAAGACAGTTGGGCCTGAGGGGTGCCGGCGTTG 45007 Query 146354 AACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATA 146413 |||| || || || || || |||| || | ||||| ||||| |||||| Sbjct 45006 AACAGAGTGGGCGAGGCATGGGTGAACAGCTTGCTCGACATCAAGTTGTACGTCTCGATA 44947 Query 146414 GCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGC 146473 || | || || ||| || |||||| | |||||| ||||| | ||||||||| ||| Sbjct 44946 ACGCGCTCAACGTTGTCACCCCAAATGCCAACAGCGACACGCATAATCATGTGTTGCGGC 44887 Query 146474 CGCTCCGC 146481 | ||| || Sbjct 44886 CTCTCGGC 44879 >seq63 Length=145700 Score = 143 bits (158), Expect = 3e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||||| | || | ||| |||||||| || |||||||| ||| | Sbjct 39599 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 39540 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| || ||||||||||| || ||| Sbjct 39539 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 39480 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 39479 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 39420 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||| | || ||||| || || || || ||||| |||||||||| Sbjct 39419 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATGA 39371 >seq245 Length=397273 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | || ||||| || || | || |||||||| ||||||||||||||| Sbjct 356442 CCTCCGCGGAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGTAATCGGAG 356501 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| || || || || ||| |||| | |||||||||||| ||||| Sbjct 356502 AGCGTGCGACCATCCTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGA 356561 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || ||| ||||| | || | ||||| | ||||||| Sbjct 356562 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGACC 356621 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || ||||| ||||| || |||||||||||||| Sbjct 356622 TCCAAAGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 356668 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || | || | || || |||||||| |||||||| ||||| Sbjct 356670 CCACCACGCAGACGAAGGACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGCTG 356729 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| | || | ||||||||||| |||||| Sbjct 356730 AGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGAGGG 356789 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | ||||||| |||||| | Sbjct 356790 ATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTATCGGAGGACTCAACC 356849 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| || | ||| || ||||| Sbjct 356850 TCGAGAGTGATGGTCTTTCCGGT 356872 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | ||||||||||| || |||||||||||| Sbjct 356214 CCACCACGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGAT 356273 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| | ||||||||| ||| |||| | ||| |||||||| ||||| Sbjct 356274 AGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAGGAGGA 356333 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | || | || || | ||||||| Sbjct 356334 ATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCTGAAGACTCGACT 356393 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| | || || |||||||| ||||| Sbjct 356394 TCCAAAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAAATTTGCAT 356440 >seq1073 Length=8604 Score = 118 bits (130), Expect = 1e-21 Identities = 165/226 (73%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAAC-AGCAGCACCGCGAC 46145 || ||| | |||||||| |||||||||| | |||||||||||| | ||| | | || Sbjct 2586 CCCTGCATTCGCAAGAAGGCCGACTGGGCCCTCAAGTGGATCAACGACCAG-AAGTCCAC 2644 Query 46146 TTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTT 46205 |||||| ||||| | || ||||| || ||| |||||| |||| || || || || Sbjct 2645 TTTCGCTCAGCGTCTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCCTT 2704 Query 46206 TGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACG 46264 ||| ||||||||| |||| || | || | ||||||| |||||||| || ||| | Sbjct 2705 TGCGTCCATCTTTTGGCTCAAGAAGCGTGGTC-TCATGCCTGGCCTGACCTTCTCCAATG 2763 Query 46265 AGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT 46310 | || || || |||||||| || ||||| || || ||||| || || Sbjct 2764 AACTCATCTCTCGCGACGAAGGACTGCACACCGATTTTGCCTGCCT 2809 >seq663 Length=189090 Score = 105 bits (116), Expect = 6e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| | |||||| |||||| |||||||| || ||| ||| Sbjct 17601 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGA 17542 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || ||||||||||| || ||||| || || ||||| ||| || ||||| | | Sbjct 17541 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 17482 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || || | |||||| | |||| ||||| ||| ||||| || || || || |||| Sbjct 17481 CGATCGTGTCCGAGGACTCAACCTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTAACGA 17422 Query 131225 A 131225 | Sbjct 17421 A 17421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472005271395840