Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq184 136 3e-27 seq409 105 4e-18 seq987 91.5 1e-13 >seq184 Length=11254 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 9049 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 8990 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 8989 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 8955 >seq409 Length=276545 Score = 105 bits (116), Expect = 4e-18 Identities = 202/295 (68%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 6194 GGACGCGTTCTACCGCTACAAAATGCCGC-GCATCTGCGCCAAGGTCGAGGGTAAGGGAA 6252 |||||| |||||||| ||||| ||| | || | | | ||||| ||||||| ||||| | Sbjct 94324 GGACGCCTTCTACCGTTACAAGATGGAGAAGCTTGT-CACCAAGATCGAGGGCAAGGGTA 94382 Query 6253 ACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTG 6312 ||||||| || ||||| || |||||| || || ||| | | |||| ||||||| Sbjct 94383 ACGGTATCAAGACCGTTATCGTCAACCTGAGCAGCGTTGCTCAATCCCTCGCTCGCCCTG 94442 Query 6313 CCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACA 6372 ||| | || || ||||| | ||| || || || ||||| | | |||| | Sbjct 94443 GTGCCTTTGTCATCAAGTACTTCGGCTTCGAGCTCGGTGCCCAGACCAACGTCGATCCCG 94502 Query 6373 AAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTG 6432 |||| |||| ||| | ||||| || || ||| | |||||||||||||| || | Sbjct 94503 CCGACGACCGCTGGATCATCAACGGCTCCCACAACGCCGCCAAGCTGCAGGATCATCTCG 94562 Query 6433 ACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 | || || || ||| || || || || | | ||| | ||||| |||||||| Sbjct 94563 ATGGTTTCATCAACAAATTCGTTCTCTGCAAGAAGTGCAAGAACCCCGAGACCGA 94617 >seq987 Length=10416 Score = 91.5 bits (100), Expect = 1e-13 Identities = 70/83 (84%), Gaps = 5/83 (6%) Strand=Plus/Minus Query 25909 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCT 25963 ||||||| ||||| ||||| |||||||||||||| || || ||||||||||||| Sbjct 7554 TTCCCTTAGCTGTAGTTTCACTAGATAGTAGATAAGGATAGTGGGAATCTCGTTAATCTA 7495 Query 25964 TTCATGCGCGTCACTAATTAGAT 25986 ||||| ||||||||||||||||| Sbjct 7494 TTCATACGCGTCACTAATTAGAT 7472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334941991152356