Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq184 136 3e-27
seq409 105 4e-18
seq987 91.5 1e-13
>seq184
Length=11254
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 9049 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 8990
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 8989 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 8955
>seq409
Length=276545
Score = 105 bits (116), Expect = 4e-18
Identities = 202/295 (68%), Gaps = 2/295 (1%)
Strand=Plus/Plus
Query 6194 GGACGCGTTCTACCGCTACAAAATGCCGC-GCATCTGCGCCAAGGTCGAGGGTAAGGGAA 6252
|||||| |||||||| ||||| ||| | || | | | ||||| ||||||| ||||| |
Sbjct 94324 GGACGCCTTCTACCGTTACAAGATGGAGAAGCTTGT-CACCAAGATCGAGGGCAAGGGTA 94382
Query 6253 ACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTG 6312
||||||| || ||||| || |||||| || || ||| | | |||| |||||||
Sbjct 94383 ACGGTATCAAGACCGTTATCGTCAACCTGAGCAGCGTTGCTCAATCCCTCGCTCGCCCTG 94442
Query 6313 CCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACA 6372
||| | || || ||||| | ||| || || || ||||| | | |||| |
Sbjct 94443 GTGCCTTTGTCATCAAGTACTTCGGCTTCGAGCTCGGTGCCCAGACCAACGTCGATCCCG 94502
Query 6373 AAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTG 6432
|||| |||| ||| | ||||| || || ||| | |||||||||||||| || |
Sbjct 94503 CCGACGACCGCTGGATCATCAACGGCTCCCACAACGCCGCCAAGCTGCAGGATCATCTCG 94562
Query 6433 ACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487
| || || || ||| || || || || | | ||| | ||||| ||||||||
Sbjct 94563 ATGGTTTCATCAACAAATTCGTTCTCTGCAAGAAGTGCAAGAACCCCGAGACCGA 94617
>seq987
Length=10416
Score = 91.5 bits (100), Expect = 1e-13
Identities = 70/83 (84%), Gaps = 5/83 (6%)
Strand=Plus/Minus
Query 25909 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCT 25963
||||||| ||||| ||||| |||||||||||||| || || |||||||||||||
Sbjct 7554 TTCCCTTAGCTGTAGTTTCACTAGATAGTAGATAAGGATAGTGGGAATCTCGTTAATCTA 7495
Query 25964 TTCATGCGCGTCACTAATTAGAT 25986
||||| |||||||||||||||||
Sbjct 7494 TTCATACGCGTCACTAATTAGAT 7472
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334941991152356
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |