Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq164 154 2e-32
seq1073 100 4e-16
>seq164
Length=162670
Score = 154 bits (170), Expect = 2e-32
Identities = 449/686 (65%), Gaps = 18/686 (3%)
Strand=Plus/Minus
Query 63038 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63097
|||||||| | | ||| || |||| | || |||| ||||| ||||||||||| |||
Sbjct 45447 GGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGATCAGGGATC 45388
Query 63098 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63157
||||| || | || ||||| | || | ||||| || || ||||| ||||
Sbjct 45387 CAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGA 45328
Query 63158 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63217
||||||||| | | | ||| | ||||| || || | ||| ||||| | | |||||
Sbjct 45327 TCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGT 45268
Query 63218 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63277
|| ||||| || || || || | || | ||||||||| || | || | || ||| ||
Sbjct 45267 CGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGG 45208
Query 63278 ATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTA 63337
| | ||| ||||| || || ||||| || | ||| ||| ||| ||| |||||| |
Sbjct 45207 ACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAACGAATGCGA 45148
Query 63338 CTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAAC 63394
| ||| ||||| || || || ||||| || || || | ||||| ||| || |
Sbjct 45147 TGGACGTTG--AGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCA-CGTCTTGAGG 45091
Query 63395 GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT 63454
|| || |||||||| || || || ||| |||| | | || || || ||||| |
Sbjct 45090 GTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAAGACAGT 45031
Query 63455 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCA 63514
||| || || || || || || | || || || || || || ||| ||
Sbjct 45030 TGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAACAGCTTGCTC 44971
Query 63515 GAAAGTAGATTGTACGTCTCAATA----GCTGA--GTCTATATCCCATTGATGAATTCCT 63568
|| | | ||||||||||| ||| ||| | || | |||| ||| ||
Sbjct 44970 GACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCA------AATGCCA 44917
Query 63569 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAAC 63628
|| ||||||||||| | |||||| || || || || | |||||| | || || |
Sbjct 44916 ACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGATCTTGAGG 44857
Query 63629 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 63688
| ||| || | ||||| || || || || || || | ||| ||||| || |||||
Sbjct 44856 AGGTACGACCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGTAG 44797
Query 63689 ATAATAACCGAGTTGAGTTTATCCTT 63714
| ||| |||||| ||| | |||||
Sbjct 44796 ACAATCGCCGAGTCGAGCTCCTCCTT 44771
>seq1073
Length=8604
Score = 100 bits (110), Expect = 4e-16
Identities = 148/209 (71%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720
|| || |||||| ||| || || ||||| | | || | ||| ||||| || || ||
Sbjct 2806 CAGGCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGG 2747
Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780
|| ||||| || |||||||| || |||||||| ||||||||||| | || || |||||
Sbjct 2746 CCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAAG 2687
Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATGT 32837
|| || || || || || ||||| | ||| | || | || || | ||| |
Sbjct 2686 ATGCCCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAAAGTGGACTTCTGGTCGTTG 2627
Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTT 32866
|||||||| | ||||| |||||||||||
Sbjct 2626 ATCCACTTGAGGGCCCAGTCGGCCTTCTT 2598
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633621893569600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |