Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq1073 82.4 9e-11
>seq1073
Length=8604
Score = 82.4 bits (90), Expect = 9e-11
Identities = 148/214 (69%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150
||| ||||| ||||| || | |||||||| || || || | |||||| ||| || |
Sbjct 2807 GCAGGCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAG 2748
Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210
|| || | || || || |||||||||||||| || || ||||| ||| || || ||
Sbjct 2747 GCCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAA 2688
Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT--- 93267
|| || || || || || || || |||| ||| | || ||| | ||| || ||
Sbjct 2687 GATGCCCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAAA---GTGGACTT-CTGGT 2632
Query 93268 -GCTGATCCATTTTAAAGCCCAATCGGCTTTTTT 93300
| ||||||| || | ||||| ||||| || ||
Sbjct 2631 CGTTGATCCACTTGAGGGCCCAGTCGGCCTTCTT 2598
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556851918070240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |