Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq245 131 1e-25 seq63 118 9e-22 seq164 96.9 3e-15 >seq245 Length=397273 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || || ||||| || ||| ||||| | ||||| || | | Sbjct 356440 ATGCAAATTTTCGTCAAGACCTTGACCGGCAAGACGATCACTTTGGAAGTCGAGTCTTCA 356381 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || || || ||||||||||| ||||| || || || Sbjct 356380 GACACCATCGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 356321 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| || || ||||| ||||| |||||| || ||| | |||||||||||| Sbjct 356320 CAACGTCTTATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGTACCCTATCCGATTACAAC 356261 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 356260 ATCCAGAAGGAGTCGAC 356244 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| | ||||| || || | ||| | || || || | | Sbjct 356668 ATGCAGATTTTCGTCAAGACTCTGACCGGCAAGACCATTACTTTGGAGGTCGAGTCTTCG 356609 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| || ||||| ||||||||||||||||| || || || Sbjct 356608 GATACCATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAG 356549 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||| ||||| | |||||| ||||| |||||||||||||| Sbjct 356548 CAGCGTCTCATCTTCGCCGGAAAACAACTTGAGGATGGTCGCACGCTCTCCGATTACAAC 356489 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || | || || || | || | ||||||||| Sbjct 356488 ATTCAGAAGGAGTCTACTTTGCACTTGGTGCTCCGCCTCCGCGGAGGT 356441 Score = 123 bits (136), Expect = 2e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || ||||||| || || || || |||||||| | ||| || |||| Sbjct 356872 ACCGGAAAGACCATCACTCTCGAGGTTGAGTCCTCCGATACCATCGACAATGTCAAGTCC 356813 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| |||||||||||||| || ||||| || || || || || || || ||||| Sbjct 356812 AAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGCCTGATTTTCGCTGGCAAG 356753 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| |||||| || ||| |||||||| ||||| |||||||| Sbjct 356752 CAGCTTGAGGATGGTCGCACCCTCAGCGACTACAACATCCAAAAGGAATCCAC 356700 >seq63 Length=145700 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || ||||| || |||| ||||| ||||| | || Sbjct 39373 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 39432 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || ||||||||||| || || ||||| || Sbjct 39433 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 39492 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || |||||||| ||| | ||||| ||||||| | ||||| |||||| Sbjct 39493 CAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAAC 39552 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || |||||| | || | || |||| |||| || ||| Sbjct 39553 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTGCGTGGTGGT 39600 >seq164 Length=162670 Score = 96.9 bits (106), Expect = 3e-15 Identities = 256/388 (66%), Gaps = 5/388 (1%) Strand=Plus/Minus Query 130102 AGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCC 130161 || || ||||| ||| | | ||||||||||| || |||| || || || | || || Sbjct 45330 AGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCA 45271 Query 130162 TTCCGTTTG---CCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATT 130218 || ||| || |||||||| || | ||| ||| |||||| |||| |||| ||| Sbjct 45270 GGTCGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAGCATA 45211 Query 130219 GCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACG 130278 | | | ||||||| || ||||| |||| | | ||| | |||| | |||| | Sbjct 45210 GGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAACGAATG 45151 Query 130279 TTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCA-ATCGCGTAG 130337 ||| ||| | ||||| ||||| || | | || || |||| ||||| || | || Sbjct 45150 CGATGGACGTTGAGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCACGTCTTG-AG 45092 Query 130338 CGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGAGGCCAA 130397 || || || ||||| |||| ||| || || || | | |||||| ||||| | || Sbjct 45091 GGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAAGACAG 45032 Query 130398 TTGGGCGTAACATGATCCGCTGGCAAACAAAGTTGGACTTGCATGTGTATACATTTTGTG 130457 |||||| | | | ||| | |||| ||| || ||||| || ||| ||| Sbjct 45031 TTGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAACAGCTTGCT 44972 Query 130458 TGCCATCAAATTGTACGTTTCAAAAACG 130485 | |||||| |||||||| || | |||| Sbjct 44971 CGACATCAAGTTGTACGTCTCGATAACG 44944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419721472704940