Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq661 114 3e-20 seq730 87.8 4e-12 seq718 87.8 4e-12 seq410 87.8 4e-12 seq285 87.8 4e-12 seq226 87.8 4e-12 seq178 87.8 4e-12 seq111 87.8 4e-12 seq34 87.8 4e-12 seq29 87.8 4e-12 seq354 86.0 1e-11 seq303 86.0 1e-11 seq224 86.0 1e-11 >seq661 Length=148812 Score = 114 bits (126), Expect = 3e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 ||| || || | |||||||| ||||| ||||| || ||||||||||| ||||| ||||| Sbjct 44156 CTCCCGTATCGCCGTCATTGGCCCCAACGGTGCTGGCAAGTCTACCCTCATCAACGTCCT 44215 Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 ||||| ||| | | || ||||| | | |||| ||||| || || || Sbjct 44216 TACTGGTGAGCTCGTCCCTACCGAGGGTGAGATCTACCAGCACGAGAACATCCGTATCGC 44275 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||||||| |||||| || ||||||||||||| |||||| | | Sbjct 44276 CTACATCAAGCAGCACGCTTTCGCCCACATTGACAACCACCTGGACAGTACTCCTTCCGA 44335 Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 ||||| |||||||| | | || | ||| |||||| ||| | |||| || Sbjct 44336 GTACATCCAGTGGCG-TTTCCAGACTGGTGAGGATCGCGAGACCATGGACCG 44386 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 280680 GGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAG 280739 || || ||| ||||||| | ||||| ||||| |||||||| || || |||||| Sbjct 44721 GGCCTCGACGCCGAGTTGGTCTCCCACTCCCGCATGCGCGGTCTGTCCGGTGGCCAGCGT 44780 Query 280740 GTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGA 280798 ||||| | ||| ||| || ||||| ||||| | || ||| |||||||||| ||||| Sbjct 44781 GTCAAGGTCGTCCTCGCCGCTTGCTCT-TGGCAGCGTCCCCACTTGATCGTTCTTGACGA 44839 Query 280799 GCCTACCAACTATCTGGACCGCGA 280822 |||||||||||| ||||||| || Sbjct 44840 GCCTACCAACTACTTGGACCGTGA 44863 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || || || ||||| |||||||||||| ||||| | |||| ||||| || | Sbjct 130546 GTCGGCTCGCTCTCTGGTGGATGGAAGATGAAGTTGGCCTTGGCTCGTGCCATGCTGAAG 130605 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 |||||||||| || |||| || || || ||||||||| |||| ||||| | ||| Sbjct 130606 GGTGCCGATGTTCTGTTGCTGGACGAACCTACCAACCACTTGGATGTTGCCAACATCGCC 130665 Query 279816 TGGCTAGTGTCCTACCT 279832 ||||| | | ||||||| Sbjct 130666 TGGCTTGAGACCTACCT 130682 Score = 91.5 bits (100), Expect = 3e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| || || |||| |||||| || || || |||| |||||||| || ||| Sbjct 43341 GGTGAGGACCTCTGCAACTGCACTTTCTCCCTTGCCTACGGTGCCAAGATTCTCCTCAAC 43400 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| ||| ||||||||||| | || || ||||| ||||||||| || | Sbjct 43401 CAGACCCATCTCCGTCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 43460 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||| || ||||| ||||| |||| ||| | | ||| ||||| | ||| Sbjct 43461 GGCAAGTCCACCCTCATGCGTGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 43519 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 ||||| | ||| || | || ||||||||| | ||||| Sbjct 43520 GAACGAGGTCAAGACCGTCTTCGTCGAGCACGACCTGGACTC 43561 >seq730 Length=53776 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 23600 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 23659 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 23660 CCCACGTCGGGCTCAATTC-CCGTC 23683 >seq718 Length=126675 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 91554 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 91613 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 91614 CCCACGTCGGGCTCAATTC-CCGTC 91637 >seq410 Length=292899 Score = 87.8 bits (96), Expect = 4e-12 Identities = 73/88 (83%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| ||||||| ||||||||||| ||||||||||||| ||| ||||||||| Sbjct 171994 ATCGCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCG 172053 Query 142561 AGCCCCACATCGGGCAGAAGTCGCCGTC 142588 | |||||| |||||| || || ||||| Sbjct 172054 ACCCCCACGTCGGGCTCAATTC-CCGTC 172080 >seq285 Length=95202 Score = 87.8 bits (96), Expect = 4e-12 Identities = 73/88 (83%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| ||||||| ||||||||||| ||||||||||||| ||| ||||||||| Sbjct 54270 ATCGCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCG 54329 Query 142561 AGCCCCACATCGGGCAGAAGTCGCCGTC 142588 | |||||| |||||| || || ||||| Sbjct 54330 ACCCCCACGTCGGGCTCAATTC-CCGTC 54356 >seq226 Length=460301 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 393970 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 394029 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 394030 CCCACGTCGGGCTCAAATC-CCGTC 394053 >seq178 Length=419527 Score = 87.8 bits (96), Expect = 4e-12 Identities = 73/88 (83%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| ||||||| ||||||||||| ||||||||||||| ||| ||||||||| Sbjct 348264 ATCGCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCG 348323 Query 142561 AGCCCCACATCGGGCAGAAGTCGCCGTC 142588 | |||||| |||||| || || ||||| Sbjct 348324 ACCCCCACGTCGGGCTCAATTC-CCGTC 348350 >seq111 Length=259078 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 12200 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 12259 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 12260 CCCACGTCGGGCTCAATTC-CCGTC 12283 >seq34 Length=187418 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 166347 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 166406 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 166407 CCCACGTCGGGCTCAATTC-CCGTC 166430 >seq29 Length=286261 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 112681 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 112622 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 112621 CCCACGTCGGGCTCAATTC-CCGTC 112598 >seq354 Length=120422 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 43920 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 43979 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 43980 CCCACGTCGGGC 43991 >seq303 Length=409155 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 25199 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 25140 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 25139 CCCACGTCGGGC 25128 >seq224 Length=221116 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 158245 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 158186 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 158185 CCCACGTCGGGC 158174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027819996153116