Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq661 114 3e-20
seq730 87.8 4e-12
seq718 87.8 4e-12
seq410 87.8 4e-12
seq285 87.8 4e-12
seq226 87.8 4e-12
seq178 87.8 4e-12
seq111 87.8 4e-12
seq34 87.8 4e-12
seq29 87.8 4e-12
seq354 86.0 1e-11
seq303 86.0 1e-11
seq224 86.0 1e-11
>seq661
Length=148812
Score = 114 bits (126), Expect = 3e-20
Identities = 166/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219
||| || || | |||||||| ||||| ||||| || ||||||||||| ||||| |||||
Sbjct 44156 CTCCCGTATCGCCGTCATTGGCCCCAACGGTGCTGGCAAGTCTACCCTCATCAACGTCCT 44215
Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279
||||| ||| | | || ||||| | | |||| ||||| || || ||
Sbjct 44216 TACTGGTGAGCTCGTCCCTACCGAGGGTGAGATCTACCAGCACGAGAACATCCGTATCGC 44275
Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339
||| || |||||||||||| |||||| || ||||||||||||| |||||| | |
Sbjct 44276 CTACATCAAGCAGCACGCTTTCGCCCACATTGACAACCACCTGGACAGTACTCCTTCCGA 44335
Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390
||||| |||||||| | | || | ||| |||||| ||| | |||| ||
Sbjct 44336 GTACATCCAGTGGCG-TTTCCAGACTGGTGAGGATCGCGAGACCATGGACCG 44386
Score = 95.1 bits (104), Expect = 2e-14
Identities = 109/144 (76%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 280680 GGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAG 280739
|| || ||| ||||||| | ||||| ||||| |||||||| || || ||||||
Sbjct 44721 GGCCTCGACGCCGAGTTGGTCTCCCACTCCCGCATGCGCGGTCTGTCCGGTGGCCAGCGT 44780
Query 280740 GTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGA 280798
||||| | ||| ||| || ||||| ||||| | || ||| |||||||||| |||||
Sbjct 44781 GTCAAGGTCGTCCTCGCCGCTTGCTCT-TGGCAGCGTCCCCACTTGATCGTTCTTGACGA 44839
Query 280799 GCCTACCAACTATCTGGACCGCGA 280822
|||||||||||| ||||||| ||
Sbjct 44840 GCCTACCAACTACTTGGACCGTGA 44863
Score = 95.1 bits (104), Expect = 2e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| || || || || ||||| |||||||||||| ||||| | |||| ||||| || |
Sbjct 130546 GTCGGCTCGCTCTCTGGTGGATGGAAGATGAAGTTGGCCTTGGCTCGTGCCATGCTGAAG 130605
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815
|||||||||| || |||| || || || ||||||||| |||| ||||| | |||
Sbjct 130606 GGTGCCGATGTTCTGTTGCTGGACGAACCTACCAACCACTTGGATGTTGCCAACATCGCC 130665
Query 279816 TGGCTAGTGTCCTACCT 279832
||||| | | |||||||
Sbjct 130666 TGGCTTGAGACCTACCT 130682
Score = 91.5 bits (100), Expect = 3e-13
Identities = 155/222 (70%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|||||||| || || |||| |||||| || || || |||| |||||||| || |||
Sbjct 43341 GGTGAGGACCTCTGCAACTGCACTTTCTCCCTTGCCTACGGTGCCAAGATTCTCCTCAAC 43400
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|||| ||| ||||||||||| | || || ||||| ||||||||| || |
Sbjct 43401 CAGACCCATCTCCGTCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 43460
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| ||| || ||||| ||||| |||| ||| | | ||| ||||| | |||
Sbjct 43461 GGCAAGTCCACCCTCATGCGTGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 43519
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
||||| | ||| || | || ||||||||| | |||||
Sbjct 43520 GAACGAGGTCAAGACCGTCTTCGTCGAGCACGACCTGGACTC 43561
>seq730
Length=53776
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 23600 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 23659
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 23660 CCCACGTCGGGCTCAATTC-CCGTC 23683
>seq718
Length=126675
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 91554 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 91613
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 91614 CCCACGTCGGGCTCAATTC-CCGTC 91637
>seq410
Length=292899
Score = 87.8 bits (96), Expect = 4e-12
Identities = 73/88 (83%), Gaps = 1/88 (1%)
Strand=Plus/Plus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|| |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||
Sbjct 171994 ATCGCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCG 172053
Query 142561 AGCCCCACATCGGGCAGAAGTCGCCGTC 142588
| |||||| |||||| || || |||||
Sbjct 172054 ACCCCCACGTCGGGCTCAATTC-CCGTC 172080
>seq285
Length=95202
Score = 87.8 bits (96), Expect = 4e-12
Identities = 73/88 (83%), Gaps = 1/88 (1%)
Strand=Plus/Plus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|| |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||
Sbjct 54270 ATCGCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCG 54329
Query 142561 AGCCCCACATCGGGCAGAAGTCGCCGTC 142588
| |||||| |||||| || || |||||
Sbjct 54330 ACCCCCACGTCGGGCTCAATTC-CCGTC 54356
>seq226
Length=460301
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 393970 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 394029
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 394030 CCCACGTCGGGCTCAAATC-CCGTC 394053
>seq178
Length=419527
Score = 87.8 bits (96), Expect = 4e-12
Identities = 73/88 (83%), Gaps = 1/88 (1%)
Strand=Plus/Plus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|| |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||
Sbjct 348264 ATCGCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCG 348323
Query 142561 AGCCCCACATCGGGCAGAAGTCGCCGTC 142588
| |||||| |||||| || || |||||
Sbjct 348324 ACCCCCACGTCGGGCTCAATTC-CCGTC 348350
>seq111
Length=259078
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 12200 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 12259
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 12260 CCCACGTCGGGCTCAATTC-CCGTC 12283
>seq34
Length=187418
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 166347 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 166406
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 166407 CCCACGTCGGGCTCAATTC-CCGTC 166430
>seq29
Length=286261
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 112681 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 112622
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 112621 CCCACGTCGGGCTCAATTC-CCGTC 112598
>seq354
Length=120422
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 43920 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 43979
Query 142564 CCCACATCGGGC 142575
||||| ||||||
Sbjct 43980 CCCACGTCGGGC 43991
>seq303
Length=409155
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 25199 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 25140
Query 142564 CCCACATCGGGC 142575
||||| ||||||
Sbjct 25139 CCCACGTCGGGC 25128
>seq224
Length=221116
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 158245 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 158186
Query 142564 CCCACATCGGGC 142575
||||| ||||||
Sbjct 158185 CCCACGTCGGGC 158174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027819996153116
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |