Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq245 176 8e-39 seq63 176 8e-39 seq661 154 3e-32 seq1073 86.0 1e-11 >seq245 Length=397273 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| ||||| ||||| || |||||||| |||||||| Sbjct 356214 CCACCACGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGAT 356273 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || |||||||| || ||||| || || | ||| ||||| || ||| Sbjct 356274 AGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAGGAGGA 356333 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||| || ||||||||||||| || || ||| Sbjct 356334 ATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCTGAAGACTCGACT 356393 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || || || || | |||||||||||| || ||||| Sbjct 356394 TCCAAAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAAATTTGCAT 356440 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| ||||| | |||||||| | || ||||| || || ||||| ||||||||| Sbjct 356442 CCTCCGCGGAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGTAATCGGAG 356501 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | || || |||||||| ||||| | || ||||| || ||| Sbjct 356502 AGCGTGCGACCATCCTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGA 356561 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | ||||||| |||||||| || | || || || Sbjct 356562 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGACC 356621 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||||| || || || || ||||||||||| |||||||| Sbjct 356622 TCCAAAGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 356668 Score = 122 bits (134), Expect = 2e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || ||||| || ||||||||||| || ||| | Sbjct 356670 CCACCACGCAGACGAAGGACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGCTG 356729 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | || |||||||| || Sbjct 356730 AGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGAGGG 356789 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | |||||| |||||||| || | || || || Sbjct 356790 ATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTATCGGAGGACTCAACC 356849 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | |||||||| ||||| |||| Sbjct 356850 TCGAGAGTGATGGTCTTTCCGGTGA 356874 >seq63 Length=145700 Score = 176 bits (194), Expect = 8e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || |||||||| || |||||||| || ||||| Sbjct 39599 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 39540 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || | | || |||||||| || Sbjct 39539 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 39480 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 39479 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 39420 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || || |||||||||||||||||||| |||||||| || Sbjct 39419 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATGAT 39370 >seq661 Length=148812 Score = 154 bits (170), Expect = 3e-32 Identities = 671/1040 (65%), Gaps = 46/1040 (4%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | || || ||||||||||||| ||||| ||| |||||| Sbjct 44350 CGCCACTGGATGTACTCGGAAGGAGTACTGTCCAGGTGGTTGTCAATGTGGGCGAAAGCG 44291 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAGTCGG 225099 ||||| | ||| || || || ||||| |||| | | | | || || || Sbjct 44290 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTCGGTAGGG 44231 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 | || || || || ||||| |||||||| |||| |||||| ||||| ||||||||||| Sbjct 44230 ACGAGC-TCACCAGTAAGGACGTTGATGAGGGTAGACTTGCCAGCACCGTTGGGGCCAAT 44172 Query 225160 CACGCCAATCCGGGAT--GACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTC--AG 225215 ||| | || ||||| || ||| ||| || | | || | |||||| || Sbjct 44171 GACGGCGATACGGGAGCCGAGCGAGCA--CTGGAAGGTGATGTCGG---AGATCTGGTAG 44117 Query 225216 GGCCAGTTT----GGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGG 225265 | | | | |||| |||| || | |||| || |||||| | Sbjct 44116 GTGCTGGTACCGGGGTACTGGAAGGACATCTTGTGGGCACGGAG------GATGGCCTTG 44063 Query 225266 TCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCG 225325 |||||| | | |||||| ||||| |||||||| ||||| ||| | | | | | Sbjct 44062 GCCTTGGTCTTGACACCCTCAAGGAAACCGGGCTCAGGGAAGCGGAACTCGACCTCGGAG 44003 Query 225326 TCCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTT 225385 | || ||||||||||| || ||| ||| ||||| |||||||||| Sbjct 44002 GCACCGAGCTCGTAGTAAGACTTGGCAGAGGGGTTCTTCTTGACGAACTCAGACAGGTTA 43943 Query 225386 CCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGC 225444 || ||| | ||||||||| | || |||| || | || ||| | ||| || Sbjct 43942 CCACGGTAGCGCTTGAGCTTGAAGCGCT---CGTAGTGGATGATGTGCTG-GCAGACGTT 43887 Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGA 225503 ||| |||||||| ||||||||||| || |||||||| | || | | ||| | || Sbjct 43886 GTCGAGGAAGCCGGAGTCGTGGGAAACGATGATGGAAGTGCAGG---GGGAGGTAGT-GA 43831 Query 225504 GGTGCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562 ||| || | |||||| ||||| | ||||||| ||||| ||||| ||||| ||| Sbjct 43830 GGTA-GTCCTCGAGCCACCTGACGTTCTTCACGTCCAAATGGTTGGTAGGCTCGTCGAGA 43772 Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622 ||||||||||| | | || || ||| || |||| ||||||||| ||||| || Sbjct 43771 AGCAGGATGTCGGGGGCCTCGAAGACGGCACGGCACAGAGCCAGCTTCATCTTCCAACCA 43712 Query 225623 CCGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGAGC 225682 || ||||| | || ||| | | | | | | | |||||| |||| |||| Sbjct 43711 CCAGACAGAGCGCTGATCTCACCCTTAACCATGCCGTTGGTGAAGCCGAACTCGTTGAGC 43652 Query 225683 GT---CTGGATAATGCGCTCGGGAGA-GCTGCGAGCGGCAACGTTGGGGTCGGACGAGAG 225738 | || || | || ||||| | || | |||| | | | | | | | Sbjct 43651 TTAGCCTCGACG-TCAGCCTGGGAGGTGGTGACACCGGCGTCCTGGAGCTTCTTCATGGT 43593 Query 225739 GTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGT 225798 | || |||||| || | ||| | ||| | |||||| || ||| | || || Sbjct 43592 CCAGTCGATGGTGGTCATCTCGGTATCAGCAGAGTCCAGGTCGTGCTCGACGAAGACGGT 43533 Query 225799 CCGGAGCT-GAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCA 225857 | || || | || | |||||| ||||| | ||| | || || ||||| | | Sbjct 43532 CTTGACCTCGTTCTGCTT-GGGGAAACCCTCGACCTGCTCGTTGTTGATGGCACGCATGA 43474 Query 225858 GGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGT 225917 |||| |||||| | |||||||||||| || ||||| | | || ||||||| Sbjct 43473 GGGTGGACTTGCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGGCCACGCTTGAGAC 43414 Query 225918 TGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGC 225977 ||| | || ||| ||||| |||||| |||| |||||||||||||| ||| | || Sbjct 43413 GGAGATGGGTCTGGTTGAGGAGAATCTTGGCACCGTAGGCAAGGGAGAAAGTGCAGTTGC 43354 Query 225978 ACAGGTCCTCACCCTCCTCG 225997 | |||||||||||||||||| Sbjct 43353 AGAGGTCCTCACCCTCCTCG 43334 >seq1073 Length=8604 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 ||||||||||| ||||||||||| || | || || ||| |||||||||| |||||| Sbjct 3112 TTCATGACGCCAGCCTTCTGGTAATCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCA 3053 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTT 10027 | ||||| ||| |||||| ||||||||||| || Sbjct 3052 CCAAGGGAGATGTTCTCCATAAAGTCAAAGGGATT 3018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921607700122720