Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq245 136 3e-27 >seq245 Length=397273 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | || || || | ||||| || || ||||||||||||||| Sbjct 356439 ATACCTCCGCGGAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGTAATCG 356498 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| ||| ||||||||||| || ||| ||||||||||||| ||||| ||| Sbjct 356499 GAGAGCGTGCGACCATCCTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGA 356558 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| |||||| || | | || | ||| || | || ||| Sbjct 356559 GGAATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCG 356618 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || |||||||||||||| || || ||||||||||| Sbjct 356619 ACCTCCAAAGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 356668 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | || || || | ||| || || || || |||||||||||| Sbjct 356213 ACCACCACGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGA 356272 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | |||||| ||| || | || || |||||| |||| ||||| || ||||| ||||| Sbjct 356273 TAGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAGGAGG 356332 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 |||||| || ||||| ||||| || | | || | |||||| | || ||||| Sbjct 356333 AATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCTGAAGACTCGAC 356392 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | ||| |||||||||| || || || ||||| ||||| Sbjct 356393 TTCCAAAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAAATTTGCAT 356440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420127866384912