Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq164 479 5e-130
seq1073 248 2e-60
>seq164
Length=162670
Score = 479 bits (530), Expect = 5e-130
Identities = 1084/1612 (67%), Gaps = 61/1612 (4%)
Strand=Plus/Minus
Query 243877 GTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGA-GG 243934
||||||||| || |||||||| ||||| |||| || || || ||||| | || ||
Sbjct 46519 GTTGAGGGATTGAGACTGGTCGATGAAGG-CGCCACGGTCGGCAGCCATCTGTACGACGG 46461
Query 243935 TCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCT 243994
| | ||| || ||||| || |||||||||| | || ||||| | | ||||
Sbjct 46460 TACG-CTGGGAAATCTCCCACACCGTCTTGTACAAGGCCTTGACCTCGGCAGGGATGTTG 46402
Query 243995 TCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCAC 244054
|||||| || | ||||| || | | |||| || | |||| ||| ||||
Sbjct 46401 GGGATGTTTTGAATGGAGCCATTCTCAGCAATGATGCGGTTCTTCATGCCGTCGGACCAC 46342
Query 244055 AGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTG---TTCACCACCTGAAACTCTCCC 244111
|| |||| | || ||| || || || | || || ||||| ||||| ||
Sbjct 46341 AGTCCCATCTCGACAAGGTCCTTGAGAAG---CCAGGGATTGACGACCTGGAACTCGCCA 46285
Query 244112 GACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCC 244171
| || |||||||||||||||| |||| | || || |||| || ||| ||||||||
Sbjct 46284 GCGAGAACGCGGCGCTGGTAGATGTTGGAGGTGTAAGGTTCGAAGCACTCGTTGTTGCCC 46225
Query 244172 AGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCG 244231
|| ||||||| ||||| ||||| |||||||| | || ||||||||||| | ||||||
Sbjct 46224 AGAATCTGCGAAGTGCTTGCAGTGGGCATGGGGGCAACGAGCAGACTGTTGCGGACGCCG 46165
Query 244232 TGCCTCTGGATGCGGAGTCTGAGCTCGTTCCA---GTCCCACATGCCCGAGAGGTCCTCG 244288
||| || ||| ||| ||| ||| | |||||| | || ||||||| |
Sbjct 46164 TGCTGCTTGAT-------CTG--CTCTTTCAAAGAGTCCCA---GTCCCAGAGGTCAGAG 46117
Query 244289 CGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAG 244348
| |||| | |||||||||| |||| || | ||||||| || ||| ||| |||||
Sbjct 46116 GGCTTGACGTCCCACATGTCGTACTGGAGAATCCCCTTGGAAACAGGGGAGCCTTCGTAC 46057
Query 244349 GTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAG 244408
| | ||||| || || ||| |||| || ||| | | ||||||||||| ||||
Sbjct 46056 GAGGAGTAGGTGCCTTCTTCCTGCGCCAACTGGCAGGACATGGTGAGGGCGGCGTGGTAG 45997
Query 244409 ATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGT--GAAGGGGATGC 244466
||||||||||||||| ||||||| | ||| || || | | |||| |||||| ||||
Sbjct 45996 ATGGTCTCGAAGATCTTCTTGTTGAGGTCTCGAGCTT--CAGCAGACTCGAAGGGCATGC 45939
Query 244467 CCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCT 244526
|| | ||| | || || || ||||| ||||||| |||||||| | || |||
Sbjct 45938 GCAGGGCAAGGAACGCATCAGCAAGGCCCTGGACGCCGAGACCGATGGGGCGATGGCGCA 45879
Query 244527 TGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGT 244586
||||| | ||| || | || ||||| |||| |||| || | | |||| | ||
Sbjct 45878 TGTTGCTGTTACGGGCCTCCTGAACAGGGTAGTGGTTGACGTCAATGATCCTGTTCAAGT 45819
Query 244587 TGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCT 244646
||||| || | || ||| ||| || | ||| ||||| || || |||
Sbjct 45818 TGCGGACGACAACCTGGGTGACCTCGTGCAACTTCTGGAAGTCATA-------GGTGCCT 45766
Query 244647 CGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCA 244706
| | || | || || | ||||| | ||||||||||||||||| |
Sbjct 45765 TCGTTGTAGTCA-----ACGAAGGTGGGCAGGGCCAGAGAAGCCAGGTTGCAGACGGCAA 45711
Query 244707 CCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGC 244766
|||| || | | ||||| || || || ||||| ||||| || |||||| |
Sbjct 45710 CCTCATCAGGCGCCGAGTACTCGATGATTTCAGTGCAAAGGTTGGAGCTGCGGATGGTAC 45651
Query 244767 CCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCC 244826
| |||| || || ||| |||| |||| |||||||||||| ||||||||||| |
Sbjct 45650 CGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGC 45591
Query 244827 CGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGC 244886
| ||||| ||| || | |||| | || ||| || | | ||||||| ||| |||
Sbjct 45590 CCGTCTCCGTCTGCGCCTCAAGGATGGCGTACCACAGCTTCTGGGCCTTGATGGTCTTGC 45531
Query 244887 GAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCT 244946
|| |||| ||||| |||||| ||||| ||||| ||||| ||| | |
Sbjct 45530 GACCCTTACCCTCGCGCTCGTACTTCTCGTACAACGCCTCAAACTCCTCGCCGTAACAGT 45471
Query 244947 CGTCTAGGCCGGGGCACGACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACC 245005
|| | ||||||| |||| || ||| ||||||||| |||| || ||| | || |||
Sbjct 45470 CGGCGAGGCCGGAGCACT-CGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACT 45412
Query 245006 CTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCG 245065
|||| ||||||||| || |||||||| ||||| |||| || || | || | |||
Sbjct 45411 CTCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCC 45352
Query 245066 TCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCC 245125
||| ||| |||||| | || || | || || ||||| ||| |||||||||||||
Sbjct 45351 TCCTTGCCGTGGTTCTTGCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCA 45292
Query 245126 ATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC 245185
| ||||| |||| ||| || || |||||||| || || ||||| | | | |||||
Sbjct 45291 AGGTAGATGGCGAAGGCACCAGGTCGCTTGTTACCGCCTTGGTCGA----CATAGCGAGC 45236
Query 245186 G----CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTT 245241
| |||||||| ||||| |||| || | ||||| ||| ||||||||||||
Sbjct 45235 GGTGTTGTTGAAGACACGCAGCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGC 45176
Query 245242 GATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGAC----ATGCCTAGTCCGCCGGCGT 245297
|||||||| ||| || | | ||| ||||||| | || | || || ||
Sbjct 45175 GATGTAGGAGCCAGTGGAAC---GAATGC-GATGGACGTTGAGACCGATGCCTCCAGCCA 45120
Query 245298 GCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACT 245357
|||||| || | |||||| |||||| |||||| ||||| || ||| |||| ||
Sbjct 45119 TCTTGGAAATCATGGCGCACGTCTTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCT 45060
Query 245358 TCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAG 245417
|||| | || || ||||| || ||||| |||| || ||| ||| | |||||||||||
Sbjct 45059 TCATATCGACGAGGAAGCACGAAGACAGTTGGGCCTGAGGGGTGCCGGCGTTGAACAGAG 45000
Query 245418 TGGGGCTGGCGTGGGTAAAGTAGC-GGCTCGAGAGGAACCCGTACGTCTGGA 245468
|||| ||| ||||| || ||| |||||| | || |||||||| ||
Sbjct 44999 TGGGCGAGGCATGGGTGAA-CAGCTTGCTCGACATCAAGTTGTACGTCTCGA 44949
>seq1073
Length=8604
Score = 248 bits (274), Expect = 2e-60
Identities = 375/522 (72%), Gaps = 21/522 (4%)
Strand=Plus/Plus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAAC 42691
|||||||| |||||||| |||||||| ||||| |||||| | | || || | | ||
Sbjct 2586 CCCTGCATTCGCAAGAAGGCCGACTGGGCCCTCAAGTGGATCAAC-GACCAGAAGTCCAC 2644
Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751
|||| || | || || ||||| | || || ||||||||||||||||| || |||||
Sbjct 2645 TTTCGCTCAGCGTCTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCCTT 2704
Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810
|| |||||||| ||||||||| || ||| || ||||| || || |||||||| || |
Sbjct 2705 TGCGTCCATCTTTTGGCTCAAGAAGCGTGGTCTC-ATGCCTGGCCTGACCTTCTCCAATG 2763
Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870
|||||||| | ||||| || ||||| | || ||||||||||| || | ||| ||
Sbjct 2764 AACTCATCTCTCGCGACGAAGGACTGCACACCGATTTTGCCTGCCTGCTCTACTC---CC 2820
Query 42871 ACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGA 42930
|||| | |||| ||| ||| || |||||| |||||| || ||||| |||
Sbjct 2821 ACCTGAAGCACCGCCCCAGCAAGCAGGTCATCCGGGACATCATTGTCGACGCCGTCAAGA 2880
Query 42931 TCGAGAAGGAGTTCCTCACGCAGTCGCTGCCC----GTGTCCCTGGTCGGCATGAACCAC 42986
| ||| ||||||||||||| || | |||||| || ||| |||| ||||| |
Sbjct 2881 TTGAGCAGGAGTTCCTCACCGAGGCTCTGCCCTGCGGTCTCC----TCGGGATGAATTCC 2936
Query 42987 GACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCT 43045
|||||||| ||||||| | | || ||||||| ||| || || | || |
Sbjct 2937 AACCTCATGAAGCAGTACATTGAATTTGTGGCCGACCGTCTGCTGGTTACCCTCGGCAAT 2996
Query 43046 CAGCCGCCTCTACAA--CACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAG 43103
| | ||||||| || || | ||||| |||||||||||||||||||| | |
Sbjct 2997 GAAAAG-GTCTACAAGTCAAGCAAT--CCCTTTGACTTTATGGAGAACATCTCCCTTGGT 3053
Query 43104 GGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145
|||||||||||||| || |||||||| |||||||| ||||||
Sbjct 3054 GGCAAGACCAACTTCTTTGAGAAGCGTGTCGCCGATTACCAG 3095
Score = 125 bits (138), Expect = 1e-23
Identities = 224/324 (69%), Gaps = 5/324 (2%)
Strand=Plus/Plus
Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368
|||||||||||||| || || |||||||||||||||||||||| || ||||||||
Sbjct 2203 ATGTACAAGAAGGCCGAGGCGTCATTCTGGACCGCCGAGGAGATTGACTTGTCCAAGGAC 2262
Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAAAAACATACT 42424
|| |||| | | || | | || |||| ||||| ||| || |||| ||
Sbjct 2263 CTTCACGACTGGAA-TAACAAGATTAACGACGACGAGAAGTTCTTCATCTCTCACATCCT 2321
Query 42425 GGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAA 42484
||||||||||| ||||| ||||| || ||||| |||||||||| | ||||
Sbjct 2322 CGCCTTCTTCGCTGCCTCGGACGGTATTGTCAACGAGAACCTGGTTGAACGCTTCAGCGG 2381
Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544
|| || ||| | |||||||| |||||||||||||||||||| || || ||| |
Sbjct 2382 TGAAGTCCAGGTCCCCGAGGCGCGTTGCTTCTACGGCTTCCAGATCATGATGGAAAACAT 2441
Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAA 42604
||||| ||| || | || || | |||||||| ||| || | |||| |
Sbjct 2442 CCACTCCGAGACCTATTCTCTTCTCATCGATACGTACATTAAGGAGCCTGCTCAGCGCAC 2501
Query 42605 CGGGCTGTTCAAGGCCATGGAGAC 42628
| |||||||| ||||| || ||
Sbjct 2502 CTATCTGTTCAACGCCATTGACAC 2525
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944324137789760
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