Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq410 116 3e-21
>seq410
Length=292899
Score = 116 bits (128), Expect = 3e-21
Identities = 201/292 (69%), Gaps = 0/292 (0%)
Strand=Plus/Minus
Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGG 20416
|| ||||| ||| |||| ||| |||||||| ||||||||| | || |||||| |||
Sbjct 35728 ACGTAAAACTGAGCAAACATGTGGCAGGGCGGGAGCGCCATCTTCTTCAGGTCCGCGGGG 35669
Query 20417 TTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATG 20476
|||||||| | || | ||| | | |||| ||| || | || | | | | |
Sbjct 35668 TTCCACGCGCTCAGCAGGATCCGGCGGTCGTACGGGTTCGTCTTGAGTTTTTGAATGACC 35609
Query 20477 TACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCC 20536
| | || |||||| | |||||||| |||||||| | | ||||| |||||| | ||
Sbjct 35608 TCGGCCAGTTGGTCGACGCCCTGGCCCGTATAGTCCGTCTTGGCGTCGACGTACTCGGCG 35549
Query 20537 CCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCC 20596
|| ||||||| ||| ||||| ||||| || || || | ||| || | | ||| |
Sbjct 35548 CCGAAGTGCCGCCATTGGAAGCCGTACACGGGGCCGAGATCGCCGACTTCGCGGTGGGAA 35489
Query 20597 AGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGA 20648
|||||| | | | || ||||| | ||||| ||| |||||| |||||||
Sbjct 35488 AGGCCGACACTGTCAAGAAACTCGCGCGAGCCGTTTCCGTCCCAAATCTTGA 35437
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441365760103840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |