Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq164 150 2e-31
seq1073 116 4e-21
>seq164
Length=162670
Score = 150 bits (166), Expect = 2e-31
Identities = 1133/1811 (63%), Gaps = 65/1811 (4%)
Strand=Plus/Minus
Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656
|| ||||||||||| || ||||| || ||| |||||||| | | ||||| ||
Sbjct 46611 CGCAGGTAGTACATTCCAGTCTTCAGACCCAGCTTCCAGCCCGCGAAGTGCATGCTGGTG 46552
Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716
| |||| | || ||| || |||| | ||| | ||| || || |||||||||
Sbjct 46551 ATCTTGCCCATGGTCGGATCTTTCATGTGAATGTTGAGGGATTGAGACTGGTCGATGAAG 46492
Query 113717 CGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTT 113773
||||| || || ||||| | | || | || | || |||||||| ||
Sbjct 46491 GCGCCACGGTCGGCAGCCATCTGTACGACGG---TACGCTGGGAAATCTCCCACACCGTC 46435
Query 113774 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCC 113833
|||| | | ||| | || | ||||| | ||| ||||| ||||||||| | |
Sbjct 46434 TTGTACAAGGCCTTGACCTCGGCAGGGATGTTGGGGATGTTTTGAATGGAGCCATTCTCA 46375
Query 113834 TTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 113893
| ||| | | |||||| | | ||||| || || |||| || |||| |
Sbjct 46374 GCAATGATGCGGTTCTTCATGCCGTCGGACCACAGTCCCATCTCGACAAGGTCCTT---G 46318
Query 113894 AGATGCTT---ATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 113950
||| || |||||| || ||||| || ||||| ||| | | | ||||| |||
Sbjct 46317 AGAAGCCAGGGATTGACGACCTGGAACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTG 46258
Query 113951 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGC 114010
| ||||| || || |||||||| ||||| |||| || || | ||| || ||||||
Sbjct 46257 GAGGTGTAAGGTTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGC 46198
Query 114011 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCG 114070
||||| || | ||| || ||||| |||| || | | | | || | || || | | |
Sbjct 46197 ATGGGGGCAACGAGCAGACTGTTGCGGACGCCGTGCTGCTTGATCTGCTCTTTCAAAGAG 46138
Query 114071 TCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGG 114130
|||||||| || | | || | | |||||| || ||||||| || || | |
Sbjct 46137 TCCCAGTCCCAGAGGTCAGAGGGCTTGACGTCCCACATGTCGTACTGGAGAATCCCCTTG 46078
Query 114131 GAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTC 114190
|| | || || || || | | ||| | ||| || ||| |||||| | | || |
Sbjct 46077 GAAACAGGGGAGCCTTCGTACGAGGAGTAGGTGCCTTCTTCCTGCGCCAACTGGCAGGAC 46018
Query 114191 GCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTG-GCCTC 114249
|||||| ||||| || || ||||| || || || | | || | || ||
Sbjct 46017 ATGGTGAGGGCGGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAG-GTCTCGAGCTTC 45959
Query 114250 GTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAG 114309
| || || || | | || || || |||| || || || ||||| |||||
Sbjct 45958 AGCAGACTCGAAGGGCATGCGCAGGGCAAGGAACGCATCAGCAAGGCCCTGGACGCCGAG 45899
Query 114310 GCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCT 114369
|| || |||||||| | ||| || || || || || || || || ||
Sbjct 45898 ACCGATGGGGCGATGGCGCATGTTGCTGTTACGGGCCTCCTGAACAGGGTAGTGGTTGAC 45839
Query 114370 ATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTA 114429
|| || | ||| || | || | |||||||| |||| || || | ||| | | |
Sbjct 45838 GTCAATGATCCTGTTCAAGTTGCGGACGACAACCTGGGTGACCTCGTGCAACTTCTGGAA 45779
Query 114430 ATCAAAACTGCGAGTCTCTTCATTG------ACATACTTAGGAAGGGCGATTGACGCCAG 114483
||| | ||| |||| ||| || | | || ||||| | || |||||
Sbjct 45778 GTCATAGGTGC------CTTCGTTGTAGTCAACGAAGGTGGGCAGGGCCAGAGAAGCCAG 45725
Query 114484 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGA 114543
|| || || | |||||| | | |||||| || ||||| || || | || ||
Sbjct 45724 GTTGCAGACGGCAACCTCATCAGGCGCCGAGTACTCGATGATTTCAGTGCAAAGGTTGGA 45665
Query 114544 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAG 114603
|| ||||| || | |||||| || || ||| ||| || |||||||| ||
Sbjct 45664 GCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAG 45605
Query 114604 CATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGG 114662
|||| | || | ||||||||||| || | || || || || | ||| | | || | |
Sbjct 45604 CATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGATGGCGTACCACAGCTTCTGGGC 45545
Query 114663 CTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTACTTTGTGTAGAGGGCTT 114716
|| | ||| ||| || |||| |||| ||||||||| ||| | || |
Sbjct 45544 CTTGA----TGGTCTTG---CGACCCTTACCCTCGCGCTCGTACTTCTCGTACAACGCCT 45492
Query 114717 CAAACTCTTCACCC--ACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG-CAGAAGAGAG 114773
||||||| || || || | || | ||| || || || | |||| || | |||||
Sbjct 45491 CAAACTCCTCGCCGTAACAG--TCGGCGAGGCC-GGAGCACTCGTTGGGACACATGAGAG 45435
Query 114774 ACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGA 114833
||| | ||| || ||| || | |||||||||||| || |||||||| || || ||
Sbjct 45434 TCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGGA 45375
Query 114834 AGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCA 114893
| ||||| || || | || || | || || || || | || | || || |
Sbjct 45374 AAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGATCGAGGAACTCGA 45315
Query 114894 TGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------AC 114947
|| ||| |||||||| || || ||||| | |||| | || | | || ||
Sbjct 45314 AGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACC---AGGTCGCTTGTTAC 45258
Query 114948 CAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCAT 115007
| | |||| ||||| | || ||| || || || || ||||| || | || ||| |
Sbjct 45257 CGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGGACGACACCGT 45198
Query 115008 CAGATTGGCCATTTGTCCCC-CGAA-TACGAGACTTATTGGCTCTGACATCATGGATGTG 115065
|| || || || ||| ||| || ||| | | ||| | | ||||| ||
Sbjct 45197 TGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCC--AGTGGAACGAATGCGATGGACGTT 45140
Query 115066 CATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGAT 115125
| ||| || || || ||| ||| || || |||||| | |||| || |||||||
Sbjct 45139 GAGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCACGTCTTGAGGGTGTCGTAGAT 45080
Query 115126 CCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTT-G 115184
|| ||||| ||||| |||| | ||| |||||||| |||| ||| ||||| |
Sbjct 45079 GCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAAGACAGTTG-GGCCTGAG 45021
Query 115185 GTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGG--GACATCTT 115242
| || || |||||||| || || || | || ||| |||||| |||| ||||||
Sbjct 45020 GGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAACAG--CTTGCTCGACATCAA 44963
Query 115243 ATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCAT 115302
| ||| ||||| | ||| || || || || ||| || | | ||| |||||
Sbjct 44962 GTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCAAATGCCAACAGCGACACGCAT 44903
Query 115303 AAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTC 115362
|| ||||| ||| || | || | | ||||||| | | ||||||| | ||||
Sbjct 44902 AATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGATCTTGAGGAGGTACGACCTCTC 44843
Query 115363 CAAGGTCTTGA 115373
|||||||||||
Sbjct 44842 CAAGGTCTTGA 44832
>seq1073
Length=8604
Score = 116 bits (128), Expect = 4e-21
Identities = 121/159 (76%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105
|||||| || ||| || || ||||| || |||||||||||||| |||||| ||| ||
Sbjct 2804 GGCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGCC 2745
Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165
||||||||||| |||||||| | ||| || || | ||| | ||| |||||||||||
Sbjct 2744 AGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAAGAT 2685
Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA 126204
||||| ||| ||||| || | ||||||| ||| ||
Sbjct 2684 GCCCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAA 2646
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597344072210080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |