Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq245 114 1e-20 seq63 87.8 2e-12 >seq245 Length=397273 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||||| | || | || || || || |||||||||||||| | Sbjct 356441 ACCTCCGCGGAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGTAATCGGA 356500 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| | || ||||| || || ||||| | ||||| ||||||||||| ||||| Sbjct 356501 GAGCGTGCGACCATCCTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGAGG 356560 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || || ||| || || | ||||| | || || Sbjct 356561 AATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGAC 356620 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | |||||||||||||| ||| || |||||||| ||||| Sbjct 356621 CTCCAAAGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 356668 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | || | |||||| || || || ||||||||||| | | ||| || | || Sbjct 356229 AGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGATAGGGTACGACCATCC 356288 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||||||| || | || || || |||||||| |||||||| || || || || Sbjct 356289 TCCAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 356348 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || | || ||||| | ||| | ||| Sbjct 356349 TGGATCTTGCTCTTCACATTGTCGATGGTGTCTGAAGACTCGACTTCCAAAGTGATCGTC 356408 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||||| || || |||||||||||||| Sbjct 356409 TTGCCGGTCAAGGTCTTGACGAAAATTTGCAT 356440 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||| || || || | || ||||| ||||| |||||||| || Sbjct 356669 ACCACCACGCAGACGAAGGACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGCT 356728 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| | || |||||||||||||| || |||| || ||||||||||||||||| Sbjct 356729 GAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGAGG 356788 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| ||| || | ||||| || || || Sbjct 356789 GATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTATCGGAGGACTCAAC 356848 Query 64396 TTCTACAGTTACGGTCTTGCCGGT 64419 || | ||| | |||||| ||||| Sbjct 356849 CTCGAGAGTGATGGTCTTTCCGGT 356872 >seq63 Length=145700 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| || || | || || || || || |||||||| || | Sbjct 39600 ACCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 39541 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| |||| ||||||||||||||||| | || | |||||||||||||| || Sbjct 39540 CAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGG 39481 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| ||| || | || || | ||||| Sbjct 39480 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCAC 39421 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| || || | || || ||||| || ||||| Sbjct 39420 CTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 39373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499636830665440