Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq164 381 6e-101
>seq164
Length=162670
Score = 381 bits (422), Expect = 6e-101
Identities = 1094/1669 (66%), Gaps = 34/1669 (2%)
Strand=Plus/Plus
Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774
|| ||| | ||||| | |||||| || |||||| |||||||||||||||||| ||||||
Sbjct 44813 AACTACCAATACTTCGGCTTCAAGACCTTGGAGAGGTCGTACCTCCTCAAGATCGATGGC 44872
Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834
| | || ||||| | ||||| || || | ||||| ||||| | || ||| || ||
Sbjct 44873 AAGATTGCCGAGAGGCCGCAACACATGATTATGCGTGTCGCTGTTGGCATTTGGGGTGAC 44932
Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894
|| | | ||| | | | | || ||| | |||| || ||| |||
Sbjct 44933 AACGTTGAGCGCGTTATCGAGACGTACAACTTGATGTCGAGCAAGCTGTTCACCCATGCC 44992
Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATG 93954
| || || ||||||||||| || ||||| | | || |||||||||| ||||| |
Sbjct 44993 TCGCCCACTCTGTTCAACGCCGGCACCCCTCAGGCCCAACTGTCTTCGTGCTTCCTCGTC 45052
Query 93955 ACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATC 94014
| |||| ||||||||| || || | ||||| ||||||| || || | ||
Sbjct 45053 GATATGAAGGAGGACTCCATCGAAGGCATCTACGACACCCTCAAGACGTGCGCCATGATT 45112
Query 94015 TCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTAC 94074
|| || || || || ||||| ||| ||||| | | ||| ||| || ||||||
Sbjct 45113 TCCAAGATGGCTGGAGGCATCGGTCTCAACGTCCATCGCATTCGTTCCACTGGCTCCTAC 45172
Query 94075 ATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAAC 94134
||| || ||||| || ||||||||||| ||||||||||||| || ||||||||||||
Sbjct 45173 ATCGCGGGCACCAACGGAACCTCCAACGGTGTCGTCCCTATGCTGCGTGTCTTCAACAAC 45232
Query 94135 GCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTC 94194
| || ||||| || ||||| || ||| | | | ||| | ||||| |||| ||
Sbjct 45233 ACCGCTCGCTATGTCGACCAAGGCGGTAACAAGCGACCTGGTGCCTTCGCCATCTACCTT 45292
Query 94195 GAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGAT 94254
|||||||||||||| || || | ||| |||| || || |||||||||||||| ||
Sbjct 45293 GAGCCCTGGCACGCCGATGTCTTCGAGTTCCTCGATCTTCGCAAGAACCACGGCAAGGAG 45352
Query 94255 CTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGC 94314
|| | ||| | || || ||| ||| || ||| | || || || || ||||| |
Sbjct 45353 GAGGTCCGTGCCCGCGATCTTTTCCTCGCCCTTTGGATCCCTGATCTCTTCATGAAGAGA 45412
Query 94315 GTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGAC 94374
|||||||| ||| | ||||| ||| | |||||||| || || |||| || |||||
Sbjct 45413 GTCGAGAAGAACGGTGACTGGACTCTCATGTGTCCCAACGAGTGCTCCGGCCTCGCCGAC 45472
Query 94375 GTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCAAGGCCAG 94433
|| || | ||||| | ||||| | |||| | ||| |||| |||| |
Sbjct 45473 TGTTACGGCGAGGAGTTTGAGGCGTTGTACGAGAAGTACG-AGCGCGAGGGTAAGGGTCG 45531
Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493
||| || | || |||||||||| | ||| | || | ||| |||||||||
Sbjct 45532 CAAGACCATCAAGGCCCAGAAGCTGTGGTACGCCATCCTTGAGGCGCAGACGGAGACGGG 45591
Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553
| |||| ||| ||| ||||||| | | |||| |||| ||||||| || |||||||
Sbjct 45592 CAACCCCTTCATGCTGTACAAGGACGCCGCCAACCGCAAGAGCAACCAGAAGAACCTCGG 45651
Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613
||| ||||| || || ||||| || || ||||||| | | || || ||| |
Sbjct 45652 TACCATCCGCAGCTCCAACCTTTGCACTGAAATCATCGAGTACTCGGCGCCTGATGAGGT 45711
Query 94614 TGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTC 94673
||| || || ||||||| || | |||| |||| ||||| || ||||| |
Sbjct 45712 TGCCGTCTGCAACCTGGCTTCTCTGGCCCTGCCCACCTTCGT------TGACTACA--AC 45763
Query 94674 TACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATG--GTCTTGAAC 94731
| || | | || | || || | | || | ||| || ||| |||
Sbjct 45764 GAAGGC-ACCTATGACTTCCAGAAGTTGCACGAGGTCAC--CCAGGTTGTCGTCCGCAAC 45820
Query 94732 CTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTG 94791
|||||||| | || ||| ||| |||||| || | |||||| ||| ||| ||
Sbjct 45821 TTGAACAGGATCATTGACGTCAACCACTACCCTGTTCAGGAGGCCCGTAACAGCAACATG 45880
Query 94792 AAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGT 94851
||||| |||||||| ||||||||||||| | || || ||| | | ||||
Sbjct 45881 CGCCATCGCCCCATCGGTCTCGGCGTCCAGGGCCTTGCTGATGCGTTCCTTGCCCTGCGC 45940
Query 94852 CTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTAT 94911
|||||| ||| |||| || || | | || ||| || ||||| | ||| ||
Sbjct 45941 ATGCCCTTCGAGTCTGCTGAAGCTCGAGACCTCAACAAGAAGATCTTCGAGACCATCTAC 46000
Query 94912 TACGGGGCCATGAAACAATCCGTCCACTTGGC-CAGATCGGACGGCGGGCCACACGAATC 94970
||| ||| | | ||| ||| ||||| || ||| | || | || ||
Sbjct 46001 CACGCCGCCCTCACCATGTCCTGCCAGTTGGCGCA----GGAAGAAGGCACCTACTCCTC 46056
Query 94971 GTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCC 95030
|| | || || || | |||| ||| | |||| |||| | |||| || |||||
Sbjct 46057 GTACGAAGGCTCCCCTGTTTCCAAGGGGATTCTCCAGTACGACATGTGGGACGTCAAGCC 46116
Query 95031 CTCGGGTCTGTACGACTGGGAAGCTCT--ACGCGCTGATGTTATCAAACACGGTGTGAAA 95088
||| | || | |||||||| || | | | || || | | | ||||| ||
Sbjct 46117 CTCTGACCTCTGGGACTGGGACTCTTTGAAAGAGCAGA--TCAAGCAGCACGGCGTCCGC 46174
Query 95089 AACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAAC 95148
||| ||||| || |||||||||||||| || ||| ||||||| || |||||||||
Sbjct 46175 AACAGTCTGCTCGTTGCCCCCATGCCCACTGCAAGCACTTCGCAGATTCTGGGCAACAAC 46234
Query 95149 GAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTC 95208
|||| |||||||| | |||||||||| | ||| | | || || ||||| || || |||
Sbjct 46235 GAGTGCTTCGAACCTTACACCTCCAACATCTACCAGCGCCGCGTTCTCGCTGGCGAGTTC 46294
Query 95209 CCCGTCATCAACAAGCACCTCCTACGGGACC-TGACGTCTCTGGGTGTGTGGGGTGACAA 95267
| ||| |||| || || ||||| || || |||| ||||| |||
Sbjct 46295 CAGGTCGTCAATCCCTGGCTTCTCAAGGACCTTGTCG-AGATGGGACTGTGGTCCGACGG 46353
Query 95268 GGTCAAGAACC----AACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATAC 95323
| ||||||| | |||| | || |||||| | || |||||||| | || |
Sbjct 46354 CATGAAGAACCGCATCATTGCT----GAGAATGGCTCCATTCAAAACATCCCCAACATCC 46409
Query 95324 CGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372
| | || ||||||| | |||||||| ||||||||||| | |||||
Sbjct 46410 CTGCCGAGGTCAAGGCCTTGTACAAGACGGTGTGGGAGATTTCCCAGCG 46458
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494715309164960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |