Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq164 203 3e-47
seq1073 150 2e-31
seq245 105 7e-18
seq63 95.1 1e-14
>seq164
Length=162670
Score = 203 bits (224), Expect = 3e-47
Identities = 930/1445 (64%), Gaps = 39/1445 (3%)
Strand=Plus/Minus
Query 153030 TTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAGGT 153089
||||| || || |||||||| || | || || | | || | ||| ||| |||||
Sbjct 46305 TTGACGACCTGGAACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTGGAGGTGTAAGGT 46246
Query 153090 TCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCACC 153149
|| ||| | ||||| ||||| || || || | ||| |||| || |||||| || ||
Sbjct 46245 TCGAAGCACTCGTTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGCATGGGGGCAACG 46186
Query 153150 AACAAAGAATTCCGCAAGCCGTGC-GCTCGAATGTCGTCCTTCAACGCCTGCCAATCCCA 153208
| || | || || | ||||||| ||| || | | || ||||| | | ||| |||||
Sbjct 46185 AGCAGACTGTTGCGGACGCCGTGCTGCTTGA-TCTGCTCTTTCAAAGAGTCCCAGTCCCA 46127
Query 153209 CAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACA-CTCCTCG---ACTGGCGG 153264
|| | || || | ||| ||||||||||||||| | | | ||| | || || |
Sbjct 46126 GAGGTCAGAGGGCTTGACGTCCCACATGTCGTACTGGAGAATCCCCTTGGAAACAGG--G 46069
Query 153265 GACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGA 153324
|| ||| | ||| |||| |||| || || |||| | |||| ||
Sbjct 46068 GA--GCCTTCGTACGAGGAGTAGGTGCCTTCTTCCTGCGCCAACTGGCAGGACATGGTGA 46011
Query 153325 GCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCT 153384
| ||| | | ||| ||||| ||| ||| | || ||||| | ||||| | ||
Sbjct 46010 GGGCGGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCTCGAGCTTCAGCAGACT 45951
Query 153385 CGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGG 153444
|| | ||||||||||| | || || || || || ||||||| |||| |||||||
Sbjct 45950 CGAAGGGCATGCGCAGGGCAAGGAACGCATCAGCAAGGCCCTGGACGCCGAGACCGATGG 45891
Query 153445 GTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT--ATGGGATAGTGATTGCGATCGAT 153502
| ||||| | ||||||| | || ||| || | || ||||| ||| || ||
Sbjct 45890 GGCGATGGCGCATGTTGCTGTTACGGGC-CTC-CTGAACAGGGTAGTGGTTGACGTCAAT 45833
Query 153503 AATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATA 153562
|| |||| | |||||| || || || | || | | | | | |||| ||| |||||
Sbjct 45832 GATCCTGTTCAAGTTGCGGACGACAACCTGGGTGACCTCGTGCAACTTCTGGAAGTCATA 45773
Query 153563 GGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGC 153622
||| ||||| | | ||| | || ||| | ||| ||||| || ||||||||
Sbjct 45772 GGTGCCTTCGTTGTAGTCAACGAAGGTGGGCAGGGCCAGAGAAGCCAGGTTGCAGACGGC 45713
Query 153623 CGTCTCTTC-GGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGA 153681
||| || |||| || ||||| | ||| || | ||| |||||| || |||
Sbjct 45712 AACCTCATCAGGCGCCGA-GTACTCGATGATTTCAGTGCAAAGGTTGGAGCTGCGGATGG 45654
Query 153682 CGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTC 153741
|| | || | ||| ||||| ||||| ||| ||||| ||| | |||||| | ||
Sbjct 45653 TACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGCATGAAGGGGT 45594
Query 153742 CGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATG-CAGGTCCTGCGCTCGCACCCGC 153800
||| ||||| |||| || | ||| | || ||| | ||| || | |
Sbjct 45593 TGCCCGTCTCCGTCTGCGCCTCAAGGATGG-CGTACCACAGCTTCTGGGCCTTGATGGTC 45535
Query 153801 TGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAG 153860
| ||| ||||||| |||||| |||||||| ||||||||| ||||||||
Sbjct 45534 TTGCGACCCTTACCCTCGCGCTCGTACTTCTCGTACAACGCCTCAAACTCCTCGCCGTAA 45475
Query 153861 CAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTG 153920
|||||||||||||||| |||| | |||||||| || | ||| | ||| | |
Sbjct 45474 CAGTCGGCGAGGCCGGAGCACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCG 45415
Query 153921 ACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAA 153980
|| | |||||| ||||| || | ||| || ||| | || ||||| || |
Sbjct 45414 ACTCTCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACC 45355
Query 153981 TCCTCCGCGCCCATGTTGCGTTTC--AGATTGA-GCACGCTATAGATGTCGGCGTGCCAG 154037
|||||| ||| ||| || | |||| || | || | | ||| ||||||||||||
Sbjct 45354 TCCTCCTTGCCGTGGTT--CTTGCGAAGATCGAGGAACTCGA-AGACATCGGCGTGCCAG 45298
Query 154038 GGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGGCGC 154094
|| |||| ||||| ||| | |||||| ||| || ||||| || ||||| | |||
Sbjct 45297 GGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTACCGCCTTGGTCGACATAGCGA 45238
Query 154095 ACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAA 154154
| | ||||||||||| |||| ||| || | | ||| | | ||| ||||||||
Sbjct 45237 GCGGTGTTGTTGAAGACACGCAGCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCC 45178
Query 154155 TTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCC-GCCGTA 154213
||| | | ||| || || | |||| ||||| | || ||||| || ||| |
Sbjct 45177 GCGATGTAGGAGCCAGTGGAACGAATGCGATGGACGTTGAGACCGATGCCTCCAGCCAT- 45119
Query 154214 CTTTGATATGGCAGCGCA-GTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGC 154272
||| || || ||||| ||| || || ||||||||| |||||| || ||
Sbjct 45118 CTTGGAAATCATGGCGCACGTC-TTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCT 45060
Query 154273 GGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCG-AAAAGAGG 154331
| ||| | ||| |||||| ||| ||| || || | | | ||| || || ||
Sbjct 45059 TCATATCGACGAGGAAGCACGAAGACAGTTG-GGCCTGAGGGGTGCCGGCGTTGAACAGA 45001
Query 154332 GTGGGACTCGCGTGCGTAAACAGTTTTTGGCT---CATCATGCGGTACGTTTCGATGGCG 154388
||||| || || || ||||| || ||| ||||| | |||||| ||||| ||
Sbjct 45000 GTGGGCGAGGCATGGGTGAACAGCTT---GCTCGACATCAAGTTGTACGTCTCGATAACG 44944
Query 154389 TCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGT 154448
|| | | || || |||||| | ||||| ||||| | |||||| ||||| |
Sbjct 44943 CGCTCAACGTTGTCACCCCAAATGCCAACAGCGACACGCATAATCATGTGTTGCGGCCTC 44884
Query 154449 TCGGC 154453
|||||
Sbjct 44883 TCGGC 44879
>seq1073
Length=8604
Score = 150 bits (166), Expect = 2e-31
Identities = 347/518 (67%), Gaps = 15/518 (3%)
Strand=Plus/Plus
Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCC 52385
|| || ||| ||||||| ||||| | ||||| | ||||||||| | | | | ||
Sbjct 2583 GTTCCCTGCATTCGCAAGAAGGCCGACTGGGCCCTCAAGTGGATCAACGACCAGAAGTCC 2642
Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445
|| | || |||| | || |||||||| || |||||| | || || ||||| |
Sbjct 2643 ACTTTCGCTCAGCGTCTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCC 2702
Query 52446 TTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAAC 52505
||||| ||||||||| | || | | || | ||||| |||||||| ||| |||
Sbjct 2703 TTTGCGTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTGACCTTCTCCAAT 2762
Query 52506 GAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGC---CTCTACT---AC 52559
|| | || || |||||||||||||||||||| || ||||| ||| ||||||| ||
Sbjct 2763 GAACTCATCTCTCGCGACGAAGGACTGCACACCGATTTTGCCTGCCTGCTCTACTCCCAC 2822
Query 52560 AAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCG 52619
|| || | | || | || | | || | |||| | ||| | || ||
Sbjct 2823 CTGAAGCAC-CGCCCCAGCAA--GCA---GGTC---ATCCGGGACATCATTGTCGACGCC 2873
Query 52620 GTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC 52679
|| || || ||||||| | || | || ||||| || || || || |||||
Sbjct 2874 GTCAAGATTGAGCAGGAGTTCCTCACCGAGGCTCTGCCCTGCGGTCTCCTCGGGATGAAT 2933
Query 52680 GCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGG 52739
| | |||| ||||||| || |||||||| || |||||| |||| |||||
Sbjct 2934 TCCAACCTCATGAAGCAGTACATTGAATTTGTGGCCGACCGTCTGCTGGTTACCCTCGGC 2993
Query 52740 CAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAG 52799
| |||| || ||| | ||||||| ||||| |||||| | ||||| || ||||
Sbjct 2994 AATGAAAAGGTCTACAAGTCAAGCAATCCCTTTGACTTTATGGAGAACATCTCCCTTGGT 3053
Query 52800 GGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|||||||||||||| || |||||||| |||| ||| ||
Sbjct 3054 GGCAAGACCAACTTCTTTGAGAAGCGTGTCGCCGATTA 3091
>seq245
Length=397273
Score = 105 bits (116), Expect = 7e-18
Identities = 143/196 (73%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| ||||||||||| ||| | || || ||||| |||||||| ||||
Sbjct 356475 GACTCCTTCTGAATGTTGTAATCGGAGAGCGTGCGACCATCCTCAAGTTGTTTTCCGGCG 356534
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
|||| |||||||| ||||| ||||| ||||| || ||||| ||| | || | || |
Sbjct 356535 AAGATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTC-CTGAATCTTCGACTTGAC 356593
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | ||| || | ||||| ||||| | || | || || || |||||||| |
Sbjct 356594 GTTG-TCGATGGTATCCGAAGACTCGACCTCCAAAGTAATGGTCTTGCCGGTCAGAGTCT 356652
Query 138599 TTACAAAAATCTGCAT 138614
| || |||||||||||
Sbjct 356653 TGACGAAAATCTGCAT 356668
>seq63
Length=145700
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| |||| || | || | | | |||||||| || |||||||||||| |
Sbjct 39599 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 39540
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || |||||| || || || |||| |||| | ||||| ||||| || ||
Sbjct 39539 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 39480
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || ||||| ||| || || | ||||| | | |||||||| ||||||||
Sbjct 39479 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT-CGATGGTGTCGGAAGACTCCAC 39421
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
||| | || | || ||||| || || || || || || |||||||||
Sbjct 39420 CTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 39372
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496254484614720
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