Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq245 156 4e-33 seq164 132 5e-26 seq63 118 1e-21 seq663 93.3 4e-14 >seq245 Length=397273 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || | |||||| || | |||||||| || ||||| ||||||||| Sbjct 356442 CCTCCGCGGAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGTAATCGGAG 356501 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| ||| || || |||||||| ||| |||| | |||||||| || ||||| Sbjct 356502 AGCGTGCGACCATCCTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGA 356561 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| || ||| ||||| |||| |||| ||| |||| | |||||| Sbjct 356562 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTG-TCGATGGTATCCGAAGACTCGAC 356620 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || |||||||||||||| || || ||||||||||| Sbjct 356621 CTCCAAAGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 356668 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | ||| ||||| || || || ||||||||| Sbjct 356214 CCACCACGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGAT 356273 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || | ||| || |||||| |||| | || ||||| || ||||| Sbjct 356274 AGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAGGAGGA 356333 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| |||||| | | ||||||| Sbjct 356334 ATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCTGAAGACTCGACT 356393 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| |||||||||| || || || ||||| ||||| Sbjct 356394 TCCAAAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAAATTTGCAT 356440 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || ||||| || ||||| |||| | |||||| ||| || ||||| || ||| Sbjct 356700 GTGGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCAAGCTGCTTGCCA 356759 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| |||||||| |||||||| || |||||||||||| || || |||| Sbjct 356760 GCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTGGACTTG 356819 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 | | |||| ||| || | ||| || |||| || | || || ||||| Sbjct 356820 ACATTGTCGATGGTATCGGAGGACTCAACCTCGAGAGTGATGGTCTTTCCGGT 356872 >seq164 Length=162670 Score = 132 bits (146), Expect = 5e-26 Identities = 1000/1578 (63%), Gaps = 100/1578 (6%) Strand=Plus/Minus Query 146038 TCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGC 146097 || || ||| |||||| || | | ||||| ||||| |||||||| ||||||||||| Sbjct 46332 TCGACAAGGTCCTTGAGAAGCCAGGGATTGACGACCTGGAACTCGCCAGCGAGAACGCGG 46273 Query 146098 CTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCC 146157 | | | || | |||| |||| | || ||||| |||||||||| || || ||||||| Sbjct 46272 CGCTGGTAGATGTTGGAGGTGTAAGGTTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAA 46213 Query 146158 GTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTTGAAT 146216 || | || || |||||| || || |||| | ||| | |||||||| | ||| || Sbjct 46212 GTGCTTGCAGTGGGCATGGGGGCAACGAGCAGACTGTTGCGGACGCCGTGCTGCTTG-AT 46154 Query 146217 CT----TTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGT 146272 || |||| ||| ||| | ||| | | || | ||| | || | | Sbjct 46153 CTGCTCTTTCAAAGAGT----CCCAGTCCCAGA---GGTCAGAGGGCTTGACGTCCCACA 46101 Query 146273 TGTCGTAATGCATAGTGCC--GCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACC 146330 ||||||| || | | | || | |||||||| | |||||||| || | || Sbjct 46100 TGTCGTACTGGAGAATCCCCTTGGAAACAGGGGAGCCT--TCGTACGAGGAGTAGGTGCC 46043 Query 146331 GTCGATCTTGGCCAGTTCGCAG--CTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCG 146388 || || |||| | |||| | | | || || | ||| |||||||| | Sbjct 46042 TTCTTCCTGCGCCAACTGGCAGGACATGGT--GAGGGCGGCGTGGTAGATGGTCTCGAAG 45985 Query 146389 ATCATGTAGTTGACGCTCCTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACA--- 146445 ||| | | ||||| | | || || | ||| |||| || | | || || Sbjct 45984 ATCTTCTTGTTGAGGTCTCGAGCTTCAGCAGACTCGAAGGGCAT---GCGCAGGGCAAGG 45928 Query 146446 AAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTT- 146504 || || || || || ||||| | |||| ||| | |||||| || | |||| ||||| Sbjct 45927 AACGCATCAGCAAGGCCCTGGACGCCGAGACCGATGGGGCGATGGCGCATGTTGCTGTTA 45868 Query 146505 CGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGAC 146564 || | || | | ||| ||||||||| ||| |||||| |||| | || || ||||| Sbjct 45867 CGGGCCTCCTGAACAGGG-TAGTGGTTGACGTCAATGATCCTGTTCAAGTTGCGGACGAC 45809 Query 146565 AATTT--------TCGTCAAACGATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACG 146616 || | |||| ||| ||| | | | ||||| || || ||| || | Sbjct 45808 AACCTGGGTGACCTCGTGCAAC--TTCTGGAAGTCATAG----GTGCCTTCGTTGTA--G 45757 Query 146617 TTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCG 146676 | ||| | || | ||| | ||| |||| ||| || |||||| ||| || | || Sbjct 45756 TCAACGAAGGTGGGCAGGGCCAGAGAAGCCAGGTTGCAGACGGCAACCTCATC--AGGCG 45699 Query 146677 C--AATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAttttttt 146734 | | |||| | || || | ||| |||||| || |||| | || | || || | Sbjct 45698 CCGAGTACTCGATGATTTCAGTGCAAAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCT 45639 Query 146735 GGTTACTAAACTT---GTTGCAGGGGTCCTTGTAGAGCATGTA-CGGTCCCCCGGTTTCG 146790 |||| || ||| |||| || ||||||||| |||||| | ||| |||| | || Sbjct 45638 GGTTGCT---CTTGCGGTTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGTCTCCG 45582 Query 146791 ACATTGGTCTCGACGATGAATCTAAACAAATC-TCTGGCCTTTACTTGTCTTTCGTACAG 146849 | | | ||| | |||| | | || | | ||||| | || | ||||| || || Sbjct 45581 TC-TGCGCCTCAAGGATG--GCGTACCACAGCTTCTGGGCCTTGATGGTCTTGCG-AC-C 45527 Query 146850 TTTATTCT---TTTCGTATTTCTCGTACAATATTTCAAA--ACTAGAACCGTACTCGTCG 146904 ||| || ||||| ||||||||||| ||||| || | ||||| |||| Sbjct 45526 CTTACCCTCGCGCTCGTACTTCTCGTACAACGCCTCAAACTCCTCG--CCGTAACAGTCG 45469 Query 146905 AGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGT 146964 |||||||| ||| |||||||| | || | ||| || |||| || || | Sbjct 45468 GCGAGGCCGGAGCACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTC 45409 Query 146965 TCCATAAACAAATCGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCG 147024 | ||| || | ||| || ||||||||| | || | | ||||| || | | ||||| Sbjct 45408 TTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCC 45349 Query 147025 GAGCCCATGTTGCGTCTCAAG-TTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCAC 147083 | || || | | | ||| | ||||| ||| | | || | ||||| ||||| | Sbjct 45348 TTG-CCGTGGTTCTTGCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAG 45290 Query 147084 GTATGCGGCGAGTGCGCCTTTTCGC---TTACCGCCCTGATCGACGTGGCGCACCATGTT 147140 ||| ||||| || || |||| |||||||| || ||||| | ||| | |||| Sbjct 45289 GTAGATGGCGAAGGCACCAGGTCGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTT 45230 Query 147141 ATTGAAGACTCGTAACATGGACACGAGGCCGCCGGATTTT---GTGGTGC---CGTTGTA 147194 |||||||| || | ||| | |||| ||| ||| || |||||| || |||| Sbjct 45229 GTTGAAGACACGCAGCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTA 45170 Query 147195 TTGAGC-------GCTGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAA 147247 |||| | | || || ||| | || |||| ||||| ||| || |||| Sbjct 45169 -GGAGCCAGTGGAACGAATGCGATGGACGTTGAGACCGATGCCTCCAGCCATCTTGGAAA 45111 Query 147248 TCAAAGCGGAC-TCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATGCAT 147306 ||| ||| || || || | ||| | ||||||||| |||||| ||| ||||| || || Sbjct 45110 TCATGGCGCACGTCTTG-AGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCAT--AT 45054 Query 147307 TG--CAGGAAACACGAACACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGC 147364 | ||||| |||||| ||| ||||| || ||||| || ||||| ||||| Sbjct 45053 CGACGAGGAAGCACGAAGACAGTTGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCG 44994 Query 147365 TGGCGTGCGTGAA---CGTGCCCAGACTCATCAATTGATACGTTTCAATGGCGCTCATAA 147421 ||| || ||||| | ||| | || |||||| | ||||| || || ||| | || Sbjct 44993 AGGCATGGGTGAACAGCTTGCTC-GA--CATCAAGTTGTACGTCTCGATAACGCGCTCAA 44937 Query 147422 CGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAA 147481 ||| || || |||| | | ||||| ||||| | |||||| || || | || |||| Sbjct 44936 CGTTGTCACCCCAAATGCCAACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAA 44877 Query 147482 TCACGTCATTGACTTTTAATAGATATCCATTGGTCAGAGTTTTGAAACCAAAGTACTTGT 147541 || | ||| || || | || || | || || ||||| || ||||| | || Sbjct 44876 TCTTGCCATCGATCTTGAGGAGGTACGACCTCTCCAAGGTCTTGAAGCCGAAGTATTGGT 44817 Query 147542 AGTCGTAGTCCCTGTTGT 147559 ||| | |||| | || || Sbjct 44816 AGTTGAAGTCACGGTCGT 44799 >seq63 Length=145700 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | || ||||| || || || ||||| ||| | Sbjct 39599 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 39540 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| ||||||| |||||||| ||||| || Sbjct 39539 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 39480 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||| | | ||| || Sbjct 39479 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 39420 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || || || || || || || || || ||||||||| Sbjct 39419 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 39372 >seq663 Length=189090 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| || || ||||| || |||||| ||||| Sbjct 17599 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATC 17540 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 || |||||||| ||||| || ||||||||||||||| ||| || ||||| | ||| Sbjct 17539 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 17480 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 | ||||||| ||| || |||| ||| | || || || ||||| || || || || Sbjct 17479 ATCGTGTCCGAGGACTCAACCTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTAACGAA 17421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475493215762240