Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq245 156 4e-33
seq164 132 5e-26
seq63 118 1e-21
seq663 93.3 4e-14
>seq245
Length=397273
Score = 156 bits (172), Expect = 4e-33
Identities = 173/228 (76%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| ||||| | || | |||||| || | |||||||| || ||||| |||||||||
Sbjct 356442 CCTCCGCGGAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGTAATCGGAG 356501
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||||| ||| || || |||||||| ||| |||| | |||||||| || |||||
Sbjct 356502 AGCGTGCGACCATCCTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGA 356561
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| || ||| ||||| |||| |||| ||| |||| | ||||||
Sbjct 356562 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTG-TCGATGGTATCCGAAGACTCGAC 356620
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | || |||||||||||||| || || |||||||||||
Sbjct 356621 CTCCAAAGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 356668
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||||| || | ||| ||||| || || || |||||||||
Sbjct 356214 CCACCACGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGAT 356273
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || ||| ||| || | ||| || |||||| |||| | || ||||| || |||||
Sbjct 356274 AGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAGGAGGA 356333
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| || ||| | | |||| |||||| | | |||||||
Sbjct 356334 ATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCTGAAGACTCGACT 356393
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | ||| |||||||||| || || || ||||| |||||
Sbjct 356394 TCCAAAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAAATTTGCAT 356440
Score = 87.8 bits (96), Expect = 2e-12
Identities = 123/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| || || ||||| || ||||| |||| | |||||| ||| || ||||| || |||
Sbjct 356700 GTGGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCAAGCTGCTTGCCA 356759
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | |||| |||||||| |||||||| || |||||||||||| || || ||||
Sbjct 356760 GCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTGGACTTG 356819
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089
| | |||| ||| || | ||| || |||| || | || || |||||
Sbjct 356820 ACATTGTCGATGGTATCGGAGGACTCAACCTCGAGAGTGATGGTCTTTCCGGT 356872
>seq164
Length=162670
Score = 132 bits (146), Expect = 5e-26
Identities = 1000/1578 (63%), Gaps = 100/1578 (6%)
Strand=Plus/Minus
Query 146038 TCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGC 146097
|| || ||| |||||| || | | ||||| ||||| |||||||| |||||||||||
Sbjct 46332 TCGACAAGGTCCTTGAGAAGCCAGGGATTGACGACCTGGAACTCGCCAGCGAGAACGCGG 46273
Query 146098 CTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCC 146157
| | | || | |||| |||| | || ||||| |||||||||| || || |||||||
Sbjct 46272 CGCTGGTAGATGTTGGAGGTGTAAGGTTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAA 46213
Query 146158 GTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTTGAAT 146216
|| | || || |||||| || || |||| | ||| | |||||||| | ||| ||
Sbjct 46212 GTGCTTGCAGTGGGCATGGGGGCAACGAGCAGACTGTTGCGGACGCCGTGCTGCTTG-AT 46154
Query 146217 CT----TTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGT 146272
|| |||| ||| ||| | ||| | | || | ||| | || | |
Sbjct 46153 CTGCTCTTTCAAAGAGT----CCCAGTCCCAGA---GGTCAGAGGGCTTGACGTCCCACA 46101
Query 146273 TGTCGTAATGCATAGTGCC--GCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACC 146330
||||||| || | | | || | |||||||| | |||||||| || | ||
Sbjct 46100 TGTCGTACTGGAGAATCCCCTTGGAAACAGGGGAGCCT--TCGTACGAGGAGTAGGTGCC 46043
Query 146331 GTCGATCTTGGCCAGTTCGCAG--CTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCG 146388
|| || |||| | |||| | | | || || | ||| |||||||| |
Sbjct 46042 TTCTTCCTGCGCCAACTGGCAGGACATGGT--GAGGGCGGCGTGGTAGATGGTCTCGAAG 45985
Query 146389 ATCATGTAGTTGACGCTCCTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACA--- 146445
||| | | ||||| | | || || | ||| |||| || | | || ||
Sbjct 45984 ATCTTCTTGTTGAGGTCTCGAGCTTCAGCAGACTCGAAGGGCAT---GCGCAGGGCAAGG 45928
Query 146446 AAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTT- 146504
|| || || || || ||||| | |||| ||| | |||||| || | |||| |||||
Sbjct 45927 AACGCATCAGCAAGGCCCTGGACGCCGAGACCGATGGGGCGATGGCGCATGTTGCTGTTA 45868
Query 146505 CGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGAC 146564
|| | || | | ||| ||||||||| ||| |||||| |||| | || || |||||
Sbjct 45867 CGGGCCTCCTGAACAGGG-TAGTGGTTGACGTCAATGATCCTGTTCAAGTTGCGGACGAC 45809
Query 146565 AATTT--------TCGTCAAACGATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACG 146616
|| | |||| ||| ||| | | | ||||| || || ||| || |
Sbjct 45808 AACCTGGGTGACCTCGTGCAAC--TTCTGGAAGTCATAG----GTGCCTTCGTTGTA--G 45757
Query 146617 TTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCG 146676
| ||| | || | ||| | ||| |||| ||| || |||||| ||| || | ||
Sbjct 45756 TCAACGAAGGTGGGCAGGGCCAGAGAAGCCAGGTTGCAGACGGCAACCTCATC--AGGCG 45699
Query 146677 C--AATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAttttttt 146734
| | |||| | || || | ||| |||||| || |||| | || | || || |
Sbjct 45698 CCGAGTACTCGATGATTTCAGTGCAAAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCT 45639
Query 146735 GGTTACTAAACTT---GTTGCAGGGGTCCTTGTAGAGCATGTA-CGGTCCCCCGGTTTCG 146790
|||| || ||| |||| || ||||||||| |||||| | ||| |||| | ||
Sbjct 45638 GGTTGCT---CTTGCGGTTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGTCTCCG 45582
Query 146791 ACATTGGTCTCGACGATGAATCTAAACAAATC-TCTGGCCTTTACTTGTCTTTCGTACAG 146849
| | | ||| | |||| | | || | | ||||| | || | ||||| || ||
Sbjct 45581 TC-TGCGCCTCAAGGATG--GCGTACCACAGCTTCTGGGCCTTGATGGTCTTGCG-AC-C 45527
Query 146850 TTTATTCT---TTTCGTATTTCTCGTACAATATTTCAAA--ACTAGAACCGTACTCGTCG 146904
||| || ||||| ||||||||||| ||||| || | ||||| ||||
Sbjct 45526 CTTACCCTCGCGCTCGTACTTCTCGTACAACGCCTCAAACTCCTCG--CCGTAACAGTCG 45469
Query 146905 AGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGT 146964
|||||||| ||| |||||||| | || | ||| || |||| || || |
Sbjct 45468 GCGAGGCCGGAGCACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTC 45409
Query 146965 TCCATAAACAAATCGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCG 147024
| ||| || | ||| || ||||||||| | || | | ||||| || | | |||||
Sbjct 45408 TTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCC 45349
Query 147025 GAGCCCATGTTGCGTCTCAAG-TTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCAC 147083
| || || | | | ||| | ||||| ||| | | || | ||||| ||||| |
Sbjct 45348 TTG-CCGTGGTTCTTGCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAG 45290
Query 147084 GTATGCGGCGAGTGCGCCTTTTCGC---TTACCGCCCTGATCGACGTGGCGCACCATGTT 147140
||| ||||| || || |||| |||||||| || ||||| | ||| | ||||
Sbjct 45289 GTAGATGGCGAAGGCACCAGGTCGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTT 45230
Query 147141 ATTGAAGACTCGTAACATGGACACGAGGCCGCCGGATTTT---GTGGTGC---CGTTGTA 147194
|||||||| || | ||| | |||| ||| ||| || |||||| || ||||
Sbjct 45229 GTTGAAGACACGCAGCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTA 45170
Query 147195 TTGAGC-------GCTGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAA 147247
|||| | | || || ||| | || |||| ||||| ||| || ||||
Sbjct 45169 -GGAGCCAGTGGAACGAATGCGATGGACGTTGAGACCGATGCCTCCAGCCATCTTGGAAA 45111
Query 147248 TCAAAGCGGAC-TCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATGCAT 147306
||| ||| || || || | ||| | ||||||||| |||||| ||| ||||| || ||
Sbjct 45110 TCATGGCGCACGTCTTG-AGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCAT--AT 45054
Query 147307 TG--CAGGAAACACGAACACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGC 147364
| ||||| |||||| ||| ||||| || ||||| || ||||| |||||
Sbjct 45053 CGACGAGGAAGCACGAAGACAGTTGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCG 44994
Query 147365 TGGCGTGCGTGAA---CGTGCCCAGACTCATCAATTGATACGTTTCAATGGCGCTCATAA 147421
||| || ||||| | ||| | || |||||| | ||||| || || ||| | ||
Sbjct 44993 AGGCATGGGTGAACAGCTTGCTC-GA--CATCAAGTTGTACGTCTCGATAACGCGCTCAA 44937
Query 147422 CGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAA 147481
||| || || |||| | | ||||| ||||| | |||||| || || | || ||||
Sbjct 44936 CGTTGTCACCCCAAATGCCAACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAA 44877
Query 147482 TCACGTCATTGACTTTTAATAGATATCCATTGGTCAGAGTTTTGAAACCAAAGTACTTGT 147541
|| | ||| || || | || || | || || ||||| || ||||| | ||
Sbjct 44876 TCTTGCCATCGATCTTGAGGAGGTACGACCTCTCCAAGGTCTTGAAGCCGAAGTATTGGT 44817
Query 147542 AGTCGTAGTCCCTGTTGT 147559
||| | |||| | || ||
Sbjct 44816 AGTTGAAGTCACGGTCGT 44799
>seq63
Length=145700
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| ||||| || | || ||||| || || || ||||| ||| |
Sbjct 39599 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 39540
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || ||||| || || ||| ||||||| |||||||| ||||| ||
Sbjct 39539 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 39480
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| || ||||| | |||| |||||| | | ||| ||
Sbjct 39479 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 39420
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | ||| | || || || || || || || || || |||||||||
Sbjct 39419 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 39372
>seq663
Length=189090
Score = 93.3 bits (102), Expect = 4e-14
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| | ||||| || || ||||| || |||||| |||||
Sbjct 17599 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATC 17540
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
|| |||||||| ||||| || ||||||||||||||| ||| || ||||| | |||
Sbjct 17539 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 17480
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104
| ||||||| ||| || |||| ||| | || || || ||||| || || || ||
Sbjct 17479 ATCGTGTCCGAGGACTCAACCTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTAACGAA 17421
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475493215762240
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