Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq164 149 8e-31 seq1073 105 8e-18 >seq164 Length=162670 Score = 149 bits (164), Expect = 8e-31 Identities = 952/1508 (63%), Gaps = 69/1508 (5%) Strand=Plus/Minus Query 115863 ATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGG 115922 |||||| || ||||| || ||||| ||| | | | |||||||||| ||||| || Sbjct 46306 ATTGACGACCTGGAACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTGGAGGTGTAAGG 46247 Query 115923 CTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCAT 115982 || |||||||| ||||| |||| || || | ||| || ||||||||||| || | Sbjct 46246 TTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGCATGGGGGCAAC 46187 Query 115983 GAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA 116042 ||| || |||||||||| || | | | || | || || | | ||||||||| | Sbjct 46186 GAGCAGACTGTTGCGGACGCCGTGCTGCTTGATCTGCTCTTTCAAAGAGTCCCAGTCCCA 46127 Query 116043 GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGA 116102 | | | || | |||||||| || ||||||| || || | ||| | || || Sbjct 46126 GAGGTCAGAGGGCTTGACGTCCCACATGTCGTACTGGAGAATCCCCTTGGAAACAGGGGA 46067 Query 116103 TCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGC 116162 || || | | || | ||| || ||| |||||| | | || | |||||| Sbjct 46066 GCCTTCGTACGAGGAGTAGGTGCCTTCTTCCTGCGCCAACTGGCAGGACATGGTGAGGGC 46007 Query 116163 TGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGT-CGGAATCAA 116221 ||||| || || ||||| || || ||| ||| || |||| | | || Sbjct 46006 GGCGTGGTAGATGGTCTCGAAGATC------TTC-TTGTTGAGGTCTCGAGCTTCAGCAG 45954 Query 116222 ACGCGAGACGGCA----CAA---AATAAATACATCCGCGAGACCTTGGACACCGAGGCCA 116274 || ||| | |||| || || || |||| || || || ||||| ||||| || Sbjct 45953 ACTCGA-AGGGCATGCGCAGGGCAAGGAACGCATCAGCAAGGCCCTGGACGCCGAGACCG 45895 Query 116275 ATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCG 116334 || |||||||| | ||| || || || || || || || || || || Sbjct 45894 ATGGGGCGATGGCGCATGTTGCTGTTACGGGCCTCCTGAACAGGGTAGTGGTTGACGTCA 45835 Query 116335 ATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCA 116394 || | ||| || | || | |||||||| |||| || || | ||| | | | ||| Sbjct 45834 ATGATCCTGTTCAAGTTGCGGACGACAACCTGGGTGACCTCGTGCAACTTCTGGAAGTCA 45775 Query 116395 AAACTGCGAGTCTCTTCATTG------ACATACTTAGGAAGGGCGATTGACGCCAGATTA 116448 | ||| |||| ||| || | | || ||||| | || ||||| || Sbjct 45774 TAGGTGC------CTTCGTTGTAGTCAACGAAGGTGGGCAGGGCCAGAGAAGCCAGGTTG 45721 Query 116449 CACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTC 116508 || || | |||||| | | |||||| || ||||| || || | || || || Sbjct 45720 CAGACGGCAACCTCATCAGGCGCCGAGTACTCGATGATTTCAGTGCAAAGGTTGGAGCTG 45661 Query 116509 TTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATA 116568 ||||| || | |||||| || || ||| ||| || |||||||| ||||| Sbjct 45660 CGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGCATG 45601 Query 116569 TATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGG 116627 | || | ||||||||||| || | || || || || | ||| | | || | | || | Sbjct 45600 AAGGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGATGGCGTACCACAGCTTCTGGGCCTTG 45541 Query 116628 CACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTACTTTGTGTAGAGGGCCTCAAA 116681 ||| ||| || |||| |||| ||||||||| ||| | |||||||| Sbjct 45540 A----TGGTCTTG---CGACCCTTACCCTCGCGCTCGTACTTCTCGTACAACGCCTCAAA 45488 Query 116682 CTCTTCACCC--ACAGCCTCTGAGAGCCCTGGTGC-CTTATCTGGACAGAAGAGAGACCA 116738 ||| || || |||| || | ||| || || || || | ||||| | ||||| ||| Sbjct 45487 CTCCTCGCCGTAACAG--TCGGCGAGGCC-GGAGCACTCGTTGGGACACATGAGAGTCCA 45431 Query 116739 TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAG 116798 | ||| || ||| || | |||||||||||| || |||||||| || || ||| || Sbjct 45430 GTCACCGTTCTTCTCGACTCTCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAG 45371 Query 116799 ATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGAT 116858 ||| || || | || || | || || || || | || | || || | || Sbjct 45370 ATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGATCGAGGAACTCGAAGAC 45311 Query 116859 ATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC------CTTGCGACGACCAGC 116912 ||| |||||||| || || ||||| | |||| | || |||| || || Sbjct 45310 ATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTACCGCCT-- 45253 Query 116913 CTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGA 116972 |||| ||||| | || || ||| || || || ||||| || | || ||| | || Sbjct 45252 -TGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGGACGACACCGTTGGA 45194 Query 116973 TTGGCCATTTGTCCCC-CGAA-TACGAGACTTGTTGGCTCTGACATCG-TGGATGTGCAT 117029 || || || ||| ||| || ||| | ||| | || || |||| || | Sbjct 45193 GGTTCCGTTGGTGCCCGCGATGTAGGAGCCAG--TGGAAC-GAATGCGATGGACGTTGAG 45137 Query 117030 ACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCC 117089 ||| || || || ||| ||| || || |||||| | |||| || ||||||| || Sbjct 45136 ACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCACGTCTTGAGGGTGTCGTAGATGCC 45077 Query 117090 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTT-GGTG 117148 ||||| ||||| |||| | ||| ||||||||| |||| ||| ||||| || | Sbjct 45076 TTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAAGACAGTTG-GGCCTGAGGGG 45018 Query 117149 TACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGG--GACATCTTATC 117206 | || |||||||| || || || | || ||| |||||| |||| |||||| | Sbjct 45017 TGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAACAG--CTTGCTCGACATCAAGTT 44960 Query 117207 GTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAA 117266 ||| ||||| | || || || || || ||| || | | ||| ||||||| Sbjct 44959 GTACGTCTCGATAACGCGCTCAACGTTGTCACCCCAAATGCCAACAGCGACACGCATAAT 44900 Query 117267 CATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAA 117326 ||||| ||| || | || | | ||||||| | | ||||||| | ||||||| Sbjct 44899 CATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGATCTTGAGGAGGTACGACCTCTCCAA 44840 Query 117327 GGTCTTGA 117334 |||||||| Sbjct 44839 GGTCTTGA 44832 >seq1073 Length=8604 Score = 105 bits (116), Expect = 8e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || || ||||| || |||||||||||||| |||||| ||| || Sbjct 2803 GCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGCCA 2744 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | ||| || || | ||| | || ||||||||||| Sbjct 2743 GGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAAGATG 2684 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCT 127670 ||||| ||| ||||| || | ||||||| Sbjct 2683 CCCTCAACAGCAGCGAAGGCGACAAGACGCT 2653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613497414560160