Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1073 158 2e-33 seq164 138 2e-27 >seq1073 Length=8604 Score = 158 bits (174), Expect = 2e-33 Identities = 356/522 (68%), Gaps = 15/522 (3%) Strand=Plus/Minus Query 159628 CTTCTTGTATT--GCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATT 159685 ||||| ||| | ||||||| |||||| || |||||||||||||| | | ||| || Sbjct 3098 CTTCTGGTAATCGGCGACACG--CTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATG 3041 Query 159686 GATTCCATGAACCCGAATGGGTT-CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGC 159744 ||||| || | || || || ||| || || ||| ||| | ||||| | | Sbjct 3040 TTCTCCATAAAGTCAAAGGGATTGCTTGACTTG-TAGACCTTTTCATTGCCGAGGGTAAC 2982 Query 159745 CAGCAACCTGTCTGCCACAAATTCGATGTAGCTACA-CATCTGCTCACAGTTGATCCCCA 159803 ||||| | ||| ||||||||||| ||||| || | ||| | | | || ||||| | Sbjct 2981 CAGCAGACGGTCGGCCACAAATTCAATGTA-CTGCTTCATGAGGTTGGAATTCATCCCGA 2923 Query 159804 GCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCA 159863 | || | ||| || || || | || ||||||| |||||||| ||| || ||| | Sbjct 2922 GGAGACCGCAGGGCAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGACGGCGTCGACAA 2863 Query 159864 CAATCTGCGAGAC-ACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGG 159922 || | | || || | | | | ||| | | | |||| | | || ||| Sbjct 2862 TGATGTCCCGGATGACCTGCTTGCTGGGGCG-GTGCTTCAGGTGGGAGT---AGAGCAGG 2807 Query 159923 CACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGG 159982 || ||||| ||| ||||||||| ||||| |||||||||| || ||||| | | | ||| Sbjct 2806 CAGGCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGG 2747 Query 159983 CCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAG 160042 || ||||||| |||||| ||||||||||| |||| |||||| |||||| || ||| Sbjct 2746 CCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAAG 2687 Query 160043 ATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGG 160102 || ||||| || || || || || || || | || | | |||| || || ||| | | Sbjct 2686 ATGCCCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAAAGTGGACTTCTGGTCGTTG 2627 Query 160103 GTCCACCTTTTGGCCCATTCAGCCTTCTTTGCG-ATGCACGG 160143 ||||| | |||||| || |||||| ||||| ||||| || Sbjct 2626 ATCCACTTGAGGGCCCAGTCGGCCTTC-TTGCGAATGCAGGG 2586 >seq164 Length=162670 Score = 138 bits (152), Expect = 2e-27 Identities = 449/682 (66%), Gaps = 13/682 (2%) Strand=Plus/Minus Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACAT 203895 ||||| ||||| |||||||| |||| | | |||| | || | | ||| |||||||| Sbjct 46656 TCTTGATCCACTGTGAACTGGATGGGGGCAGCAGCAG-CTTGAGTACGCAGGTAGTACAT 46598 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 || ||||| || ||| || ||| || | ||||||| | | |||| || | | Sbjct 46597 TCCAGTCTTCAGACCCAGCTTCCAGCCCGCGAAGTGCATGCTGGTGATCTTGCCCATGGT 46538 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 || || |||||||||||| || || || ||||||||||| |||||| || || | Sbjct 46537 CGGATCTTTCATGTGAATGTTGAGGGATTGAGACTGGTCGATGAA-GGCGCCACGGTCGG 46479 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 | ||||| | | | ||| ||| ||||||||||||||||||||| ||| | | || Sbjct 46478 CAGCCATCTGTACGACGGTACGCTGGGAAATCTCCCACACCGTCTTGTACAAGGCCTTGA 46419 Query 204075 TGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATC 204133 | ||| | | | | || || || ||||| || || || || | | || Sbjct 46418 CCTCGGCAGGGATGT-TGGGGATGTTTTGAATGGAGCCATTCTCAGCAATGATGCGGTTC 46360 Query 204134 CTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATG 204193 || | | || ||||| |||| | || || ||| | || ||| |||| | Sbjct 46359 TTCATGCCGTCGGACCACAGTCCCATCTCGACAAGGTCCTTGAGAAGCCAGGGATTGACG 46300 Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253 | ||| || || || | || || | || | | | |||| |||| | |||||||| Sbjct 46299 ACCTGGAACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTGGAGGTGTAAGGTTCGAAG 46240 Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGG 204313 |||||||||||| | |||||| | ||||| || ||||||||||| || | |||||| Sbjct 46239 CACTCGTTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGCATGGGGGCAACGAGCAGA 46180 Query 204314 GAGTTGCGCACACCGTATTTTTGGACCCTGCGC-TTCAGAGAGGTCCAGTCGTGCATCGC 204372 |||||| || |||| | | || |||| | |||| |||| |||||| | | Sbjct 46179 CTGTTGCGGACGCCGTGCTGCTTGA-TCTGCTCTTTCAAAGAGTCCCAGTCCCAGAGGTC 46121 Query 204373 ACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTT 204432 | ||| || ||| ||||||||||| |||| | || || | || ||| ||| | Sbjct 46120 AGAGGGCTTGACGTCCCACATGTCGTACTGGAGAATCCCCTTGGAAACAGGGGAGCCTTC 46061 Query 204433 GTACGTCGGATAAGGCTG--ATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGA 204490 ||||| ||| ||| || || || | |||| || ||| || || | |||| Sbjct 46060 GTACG-AGGAGTAGG-TGCCTTCTTCCTGCGCCAACTGGCAGGACATGGTGAGGGCGGCG 46003 Query 204491 TAGTACATGGTCTCAAAGATCT 204512 | ||| |||||||| ||||||| Sbjct 46002 TGGTAGATGGTCTCGAAGATCT 45981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795142517274560