Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq245 129 1e-24 seq63 118 2e-21 >seq245 Length=397273 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || ||||||||||| |||| |||||| || | | || | ||||| Sbjct 356229 AGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGATAGGGTACGACCATCC 356288 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || |||||||| ||||| |||||||| ||| ||| || || ||| Sbjct 356289 TCCAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 356348 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| |||||||| | || || ||||| ||||||||| Sbjct 356349 TGGATCTTGCTCTTCACATTGTCGATGGTGTCTGAAGACTCGACTTCCAAAGTGATCGTC 356408 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || |||||||| Sbjct 356409 TTGCCGGTCAAGGTCTTGACGAAAATTTG 356437 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| | ||| |||||||| || | |||||| || | | || | ||||| Sbjct 356457 AGCACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGTAATCGGAGAGCGTGCGACCATCC 356516 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || ||||||||||||||||||||||||||||| ||| ||| || || ||| Sbjct 356517 TCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCC 356576 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| |||| ||| || | | || || ||||| || || ||| Sbjct 356577 TGAATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGACCTCCAAAGTAATGGTC 356636 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || ||||| || Sbjct 356637 TTGCCGGTCAGAGTCTTGACGAAAATCTG 356665 Score = 104 bits (114), Expect = 6e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||||||||| || |||||||||| ||||||||| | || | ||||| Sbjct 356685 AGGACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCATCC 356744 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||| || || ||||||||||| ||| || || || ||| Sbjct 356745 TCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCC 356804 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| ||| || | | || || || | ||||| ||| Sbjct 356805 TGAATCTTGGACTTGACATTGTCGATGGTATCGGAGGACTCAACCTCGAGAGTGATGGTC 356864 Query 199598 TTACCCGTGA 199607 || || |||| Sbjct 356865 TTTCCGGTGA 356874 >seq63 Length=145700 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || |||||||| || |||||||| |||| ||||||||| | || || Sbjct 39593 CGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 39534 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| ||||||||||| | ||||||||||| || || || Sbjct 39533 CGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCC 39474 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| |||||| | | || || || | Sbjct 39473 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGG 39414 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||||||||| || || || || || || Sbjct 39413 GTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTG 39376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178902326105492