Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1073 163 3e-35 seq63 127 2e-24 seq245 118 1e-21 seq663 102 8e-17 >seq1073 Length=8604 Score = 163 bits (180), Expect = 3e-35 Identities = 350/515 (68%), Gaps = 10/515 (2%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| |||||| || || || ||| | || |||||||| || || || || || | Sbjct 3110 CATGACGCCAGCCTTCTGGTAATCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACC 3051 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCC 132707 | ||| ||| | |||||| || ||||| ||| || |||||| ||| |||| Sbjct 3050 AAGGGAGATGTTCTCCATAAAGTCAAAGGGATTGCTTGACTTGTAGACCTTTTCATTGCC 2991 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCA 132767 || ||| || ||||| | ||||||||| || || ||||| ||| |||| | | | Sbjct 2990 GAG--GGTA-ACCAGCAGACGGTCGGCCACAAATTCAATGTACTGCTTCATGAGGTTGGA 2934 Query 132768 ATTAAGTCCCAGCAGAC-GCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826 ||| | || || |||| ||| ||||| || |||||||| || ||||| || || Sbjct 2933 ATTCATCCCGAGGAGACCGCAG-GGCAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGA 2875 Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886 | |||||| | ||| |||| | | | | ||| || || ||| || || | Sbjct 2874 CGGCGTCGACAATGATGTCCCGGATGACCTGCTTGCTGGGGCGGTGCTTCAGGTGGGAGT 2815 Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 | | || ||| ||||| ||| |||| || ||||| | || |||||||| ||| || Sbjct 2814 AGAGCAGGCAGGCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGA 2755 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | |||| ||| |||||||| || || || ||||||||||| |||| || || || | Sbjct 2754 AGGTCAGGCCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGG 2695 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG-CTTCT 133065 | ||||||| |||||| || || ||||| || || || |||| |||| |||| |||| Sbjct 2694 AGAAGAAGATGCCCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAAAGTGGACTTC- 2636 Query 133066 TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 | | | |||||| || ||||| |||||||| Sbjct 2635 TGGTCGTTGATCCACTTGAGGGCCCAGTCGGCCTT 2601 Score = 154 bits (170), Expect = 1e-32 Identities = 200/276 (72%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| || |||||||| ||||| | || ||||| | ||| ||||| ||| || || Sbjct 2478 GTACGTATCGATGAGAAGAGAATAGGTCTCGGAGTGGATGTTTTCCATCATGATCTGGAA 2419 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 |||||| ||||| ||||||||| ||||| ||||| ||| || || ||||| || Sbjct 2418 GCCGTAGAAGCAACGCGCCTCGGGGACCTGGACTTCACCGCTGAAGCGTTCAACCAGGTT 2359 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||| || ||||| ||| ||||| ||||| || | ||| |||||| Sbjct 2358 CTCGTTGACAATACCGTCCGAGGCAGCGAAGAAGGCGAGGATGTGAGAGATGAAGAACTT 2299 Query 133347 CTCGTTGTCGTTCAA---GCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| |||||| | | | ||||||| | ||||||||||| ||| | |||||| Sbjct 2298 CTCGTCGTCGTTAATCTTGTTATTCCAGTCGTGAAGGTCCTTGGACAAGTCAATCTCCTC 2239 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||||| || ||||||||||| || |||||||| Sbjct 2238 GGCGGTCCAGAATGACGCCTCGGCCTTCTTGTACAT 2203 >seq63 Length=145700 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || || |||||| | || || ||| | || Sbjct 39373 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 39432 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| || ||| ||||||| Sbjct 39433 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 39492 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| ||||| || |||| |||||||| |||||||||| Sbjct 39493 CAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAAC 39552 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || || |||||||||| Sbjct 39553 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCG 39587 >seq245 Length=397273 Score = 118 bits (130), Expect = 1e-21 Identities = 159/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || ||||| || ||||| | || |||||| | | Sbjct 356440 ATGCAAATTTTCGTCAAGACCTTGACCGGCAAGACGATCACTTTGGAAGTCGAGTCTTCA 356381 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | || | | |||| || |||| ||||| ||||| ||||| | |||| Sbjct 356380 GACACCATCGACAATG--TGAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACC 356323 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || || || | ||| ||||| ||| |||| || | || ||||| ||| |||| Sbjct 356322 AGCAACGTCTTATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGTACCCTATCCGATTACA 356263 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| ||||| |||||||||| |||||||| ||| Sbjct 356262 ACATCCAGAAGGAGTCGACGCTGCACTTGGTGCTCCGT 356225 Score = 113 bits (124), Expect = 5e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAG 38325 |||| || || |||||||| |||| || ||| || |||| | | | | | | || Sbjct 356874 TCACCGGAAAGACCATCACTCTCGAGGTTGAGTCCTCCGATACCATCGACAATGTCAAGT 356815 Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 || || | ||||| ||||| || || ||||||| ||||| || |||| ||| |||| Sbjct 356814 CCAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGCCTGATTTTCGCTGGCA 356755 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 | ||||| || || | |||||||||| |||||||||||||||||||||| | || || | Sbjct 356754 AGCAGCTTGAGGATGGTCGCACCCTCAGCGACTACAACATCCAAAAGGAATCCACTCTCC 356695 Query 38446 ATTTGGTGCTGCGTTTGAGAGGCGG 38470 | | || || ||| || | || || Sbjct 356694 ACCTCGTCCTTCGTCTGCGTGGTGG 356670 >seq663 Length=189090 Score = 102 bits (112), Expect = 8e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || ||||| || ||||| ||| |||| || ||| || | |||| | Sbjct 17421 TTCGTTAAGACCCTGACGGGTAAGACCATTACCCTCGAGGTTGAGTCCTCGGACACGATC 17480 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| || ||| ||||||| ||||| | Sbjct 17481 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTG 17540 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| || || ||||| || |||| ||||||||| ||||||||||||||| ||| Sbjct 17541 ATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 17600 Query 38433 G 38433 | Sbjct 17601 G 17601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500164822243840