Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq269 345 5e-90 seq91 116 5e-21 >seq269 Length=282219 Score = 345 bits (382), Expect = 5e-90 Identities = 958/1466 (65%), Gaps = 30/1466 (2%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| || || || ||||| || || || | ||| || ||||| || || || Sbjct 188015 TCATCCTCGTCCTTGTACTTCTCAGCCTCGGAAAGCATACGCTCGATGTCCTCCTTGGAC 187956 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| ||||| ||||| |||||| | ||| || || | | |||| || || Sbjct 187955 AGGCGGCCCTTGTCATTGGTAATGACAATCTTGTTGGACTTGCCGGTGCCCTTCTCGACA 187896 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 || || |||| ||||| || || || || ||||| | || | || || || | Sbjct 187895 GCGGAGACGTTCATGATACCGTTGGCGTCGACGTCGAAGGTGACCTCGATCTGAGGAACA 187836 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || |||| ||||| || || | || || | || || | |||| ||| | Sbjct 187835 CCACGGGGAGCGGGGGGAATGCCGGTAAGCTCGAACTTGCCGAGAAGGTTGTTGTCCTTG 187776 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | || ||| ||||| || || || | || || |||| || || || | Sbjct 187775 GTGCGCTGACGCTCACCCTCGTACACCTGGATGAGGACACCAGGCTGGTTGTCGGAGAAC 187716 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||||| | ||||| | || || || || || | || || | | |||| Sbjct 187715 GTAGAGAAGACCTCAGACTTCTTGGTGGGGATAGTGGTGTTGCGGGGGATGAGCTTGGTC 187656 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || || ||||| ||| |||| || ||||| ||||| | ||||| | || || | Sbjct 187655 ATCATGCCACCAGCAGTCTCGATACCGAGAGAGAGAGGAGCGACGTCGAGAAGCAAGA-- 187598 Query 6989 TCTTGAACAGATTCGTTCCCTT-----------CACCCGTTAAGATGGCGGCTTGGACCG 7037 ||| | || || | ||| |||| | | |||||| || || || | Sbjct 187597 TCTCG------TTGGTGCTCTTGGAGGAAGTGTCACCAGACAGGATGGCAGCCTGAACAG 187544 Query 7038 TCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAA 7097 || ||||| || || |||||||| ||||| || | || || | || || ||||| | Sbjct 187543 CGGCACCGTAGGCAACAGCCTCATCAGGGTTGATGGACTTGTTGGGCTCCTTGCCGTTGA 187484 Query 7098 AATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGA 7157 | || || || | | | || || ||||| || || || |||||||||| |||| Sbjct 187483 AGTAGTCGGAAATGAGCTTCTGGATGCGGGGGATACGGGTGGAACCACCGACCAGGACGA 187424 Query 7158 TTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA 7217 | || | || | || ||||||||||| | || ||| ||||| || | | Sbjct 187423 TCTCGTGAACCTGGGACTTATCGATCTTGGCATCAGTAAGAACGCGGTCGACGGGCTGGA 187364 Query 7218 TACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTAT 7277 | ||||||| |||| || || ||||| || || |||||||| ||||| || | Sbjct 187363 TGGTGGAGCGGAACAGGTCCTGGCAAAGCTCCTCGAAGCGAGCACGGGTGATGGAGGTGT 187304 Query 7278 AGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATA 7337 |||| |||| || ||| | | || ||||| ||||||| || || || | ||| || | Sbjct 187303 AGAAGTCAATACCCTCGAAGAGAGAGTCAATCTCAATGGAGGTCTGGGCAGACGAGGACA 187244 Query 7338 ACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGG 7397 || ||||| || ||||| || || || || | ||||| || ||||| | ||| || Sbjct 187243 GGGTGCGCTTGGCACGCTCGCAAGCAGTGCGGAGGCGACGCAGAGCACGAGCGTTGGAGG 187184 Query 7398 AAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAAT 7457 | | || ||||| || || || || ||||| | |||||| | ||| | | Sbjct 187183 ACAGGTCCTTCTTGTGCTTGCGCTTGAACTCGTTGACGAAGTGGTTGACGAGGCGGTTGT 187124 Query 7458 CGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTC 7517 |||| || |||||||||||||| || || || ||||| | ||||| || |||||||| Sbjct 187123 CGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGACTTGACCTCGAAGATACCCT 187064 Query 7518 CTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGT 7577 | ||||| | | | |||||||| || ||||||||||| ||||| ||||| || |||| Sbjct 187063 CCTCAATCGTCAGGAGGGAAACATCGAAGGTACCACCACCAAGGTCGAAAATCAGAACGT 187004 Query 7578 TCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637 | || | || ||||| || |||||||| || || || || || || || || | Sbjct 187003 TGCGCTCACCCTCAGCCTTCTTGTCAAGACCGTAGGCAATGGCAGCGGCGGTGGGCTCGT 186944 Query 7638 TAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTT 7697 | || |||||||| |||||| || ||||| | ||||| || || || || || | Sbjct 186943 TGATGATACGAAGGACGTTCAGACCGGCAATGAGACCGGCATCCTTGGTAGCCTGACGCT 186884 Query 7698 GCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGAT 7757 | || ||||| |||||||| ||||| || | ||| |||| ||||| | ||| || | Sbjct 186883 GGGAGTCGTTGAAGTAGGCAGGGACAGTGATGACAGCGTTAGTGACCTGGCCACCAAGGT 186824 Query 7758 ACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAA 7817 | | || ||| | || ||| ||| |||||||| | || ||||| || | | | Sbjct 186823 AGGCCTCAGCGGTCTCGCGCATCTTGACGAGAACCATGGCGGAGATCTCCTCGGGAGTGA 186764 Query 7818 ACTGTTTCGTT-TCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACC---G 7873 | || | ||| || || || || ||||| ||||| |||| || || |||| | Sbjct 186763 A-GGTCTTGTTCTCGCCCTTGAACTCAACCTCAATGTTGGGCTT----GC--CACCCTTG 186711 Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933 || ||||| | | ||| ||||| ||| | ||||||| || ||||| Sbjct 186710 TCAATGACCTTGAAGGGGAAATGCTTCATGTCGGCCTGGACCTCGGAATCGCTGAACTTG 186651 Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTC 7993 | ||||| |||||||| || || || || ||||| | ||||||||||| |||||| Sbjct 186650 CGACCGATCAGACGCTTGGCGTCGAAGACGGTGTTGTGAGGGTTCATGGCGACCTGGTTC 186591 Query 7994 TTCGCCGCGTCCCCGATAAGACGTTC 8019 || || || || || || || || || Sbjct 186590 TTGGCGGCATCACCAATCAGGCGCTC 186565 >seq91 Length=340545 Score = 116 bits (128), Expect = 5e-21 Identities = 224/330 (68%), Gaps = 9/330 (3%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || ||||| || || || |||| ||| Sbjct 208509 TCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGCCAGTACCTCGAAGACACCC 208450 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || ||| | | || ||||| || ||||||||||| ||||| | | || | Sbjct 208449 TGGTCGATGGAAAGGAGAGAGACATCGAAAGTACCACCACCAAGGTCGTAGACGATGA-- 208392 Query 7577 TTCGTATCGTCGTCTTTGT---TCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | | | || ||| |||| || || |||||||||||||| || || || || Sbjct 208391 ----TCTGGCGCTCCTTGCCAGTCTTGTCAAGGCCGTACGCGATAGCGGCGGCAGTGGGC 208336 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || | ||| || || ||| || |||||||| | ||||| || || || || Sbjct 208335 TCGTTGACAATGCGGAGGACGTTGAGACCAGCAATGACACCGGCATCCTTGGTGGCCTGG 208276 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || || ||||| |||||||| || || || ||||| |||| ||||| ||||| ||| Sbjct 208275 CGCTGGTTGTCGTTGAAGTAGGCGGGAACGGTGACGACGGCGTGGGTGACCTTCTTGCCG 208216 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTG 7783 || || || |||| || ||||| ||| Sbjct 208215 AGGTAGTTCTCGGCGACCTCCTTCATCTTG 208186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635122669631840