Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq164 187 3e-42 seq1073 131 2e-25 seq140 102 1e-16 >seq164 Length=162670 Score = 187 bits (206), Expect = 3e-42 Identities = 940/1473 (64%), Gaps = 41/1473 (3%) Strand=Plus/Plus Query 111669 GTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTC 111728 ||| | ||||| ||| || |||||| | |||||| ||| || | || || || Sbjct 44945 GTTATCGAGACGTACAACTTGATGTCGAGCAAGCTGTTCACCCATGCCTCGCCCACTCTG 45004 Query 111729 TTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAG 111788 |||||||| || || || ||||| |||| || ||||| | | | |||||| Sbjct 45005 TTCAACGCCGGCACCCCTCAGGCCCAACTGTCTTCGTGCTTCCTCGTCGATATGAAGGAG 45064 Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848 || || ||| | ||||| |||| ||| |||| || ||| || || ||| |||| Sbjct 45065 GACTCCATCGAAGGCATCTACGACACCCTCAAGACGTGCGCCATGATTTCCAAGATGGCT 45124 Query 111849 GGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGAGGT-A 111906 || || ||||| | || ||||| | | ||| | ||| || | | || | Sbjct 45125 GGAGGCATCGGTCTCAACGTCCATCGCATTCGTTCCACT--GGCTCCTACATCGCGGGCA 45182 Query 111907 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 111966 | || || || | ||| | | || ||||| || || || ||| ||| || |||| Sbjct 45183 CCAACGGAACCTCCAACGGTGTCGTCCCTATGCTGCGTGTCTTCAACAACACCGCTCGCT 45242 Query 111967 ATGTAAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGCCAT 112020 |||| |||||| || | |||| || || |||| |||| |||||||| | Sbjct 45243 ATGTCGACCAAGGCGG---TAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCCT 45299 Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGC 112080 ||||||| ||| || | |||||||| || | || ||||| || | ||||||| | Sbjct 45300 GGCACGCCGATGTCTTCGAGTTCCTCGATCTTCGCAAGAACCACGGCAAGGAGGAGGTCC 45359 Query 112081 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140 | ||||||||| ||| ||| || ||||| || |||||||||||||||||||| ||| Sbjct 45360 GTGCCCGCGATCTTTTCCTCGCCCTTTGGATCCCTGATCTCTTCATGAAGAGAGTCGAGA 45419 Query 112141 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGT-- 112198 ||| || | ||| ||||| | ||||| || || |||| ||| |||| | || Sbjct 45420 AGAACGGTGACTGGACTCTCATGTGTCCCAACGAGTGCTCCGGCCTCGCCGA--CTGTTA 45477 Query 112199 GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--G 112256 || ||||||||||| || | ||| ||||||||| || || || | | || | Sbjct 45478 CGGCGAGGAGTTTGAGGCGTTGTACGAGAAGTACGAGCGCGAGGGTAAGG-GTC-GCAAG 45535 Query 112257 ACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 112315 || | | || | || | ||||| | || || || || | || || ||||| || | Sbjct 45536 ACCAT-CAAGGCCCAGAAGCTGTGGTACGCCATCCTTGAGGCGCAGACGGAGACGGGCAA 45594 Query 112316 ACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 112375 || | ||||| ||||| |||||| |||| ||||| || || ||||| | ||| Sbjct 45595 CCCCTTCATGCTGTACAAGGACGCCGCCAACCGCAAGAGCAACCAGAAGAACCTCGGTAC 45654 Query 112376 GATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 112435 ||| || |||||||| || || |||||| | || | | | |||||| || Sbjct 45655 CATCCGCAGCTCCAACCTTTGCACTGAAATCATCGAGTACTCGGCGCCTGATGAGGTTGC 45714 Query 112436 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG--ACA 112493 || || ||||| || || | || || |||| | || || | | | || ||| || Sbjct 45715 CGTCTGCAACCTGGCTTCTCTGGCCCTGCCCACCTTCGTTGA-CTACA-ACGAAGGCACC 45772 Query 112494 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTT 112553 | ||| | | || | ||||| || || | |||| ||| | ||||| | Sbjct 45773 TATGACTTCCAGAAGTTGCACGAGGTCACCCAGGTTGTCGTCCGCAACTTGAACAGGATC 45832 Query 112554 ATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 112613 ||||| || ||||| ||| || || ||||| || ||| | || || || Sbjct 45833 ATTGACGTCAACCACTACCCTGTTCAGGAGGCCCGTAACAGCAACATGCGCCATCGCCCC 45892 Query 112614 ATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGA 112672 || |||||||| ||||| || || || |||| ||| || | || ||| | || || Sbjct 45893 ATCGGTCTCGGCGTCCAGGGCCTTGCTGATGCGTTCCTTGCCCTG-CGCATGCCCTTCGA 45951 Query 112673 TTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCT 112732 || | ||||| || |||| | || || ||||| || || |||||||| || Sbjct 45952 GTCTGCTGAAGCTCGAGACCTCAACAAGAAGATCTTCGAGACCATCTACCACGCCGCCCT 46011 Query 112733 TGAGGCGAGTTCGG--AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 112790 | || | | ||||||| ||| || || | || | | || || || Sbjct 46012 --CACCATGTCCTGCCAGTTGGCGCAGGAAGAAGGCACCTACTCCTCGTACGAAGGCTCC 46069 Query 112791 CCAGCTTCACAAGGGG-TGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTA 112849 || | ||| ||||||| | || || | || |||||||| | || || | || Sbjct 46070 CCTGTTTC-CAAGGGGATTCTCCAGTACGACATGTGGGACGTCAAGCCCTCTGACCTCTG 46128 Query 112850 CGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGAT 112909 ||||||||| || | || || | |||||| || | || | || |||||||| | | Sbjct 46129 GGACTGGGACTCTTTGAAAGAGCAGATCAAGCAGCACGGCGTCCGCAACAGTCTGCTCGT 46188 Query 112910 GGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 112969 || || ||||| || || ||| | || || |||| || || || ||||| ||||| Sbjct 46189 TGCCCCCATGCCCACTGCAAGCACTTCGCAGATTCTGGGCAACAACGAGTGCTTCGAACC 46248 Query 112970 CTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA--- 113026 ||||| | |||||||| | | | | ||||| || ||||| | | ||||| Sbjct 46249 TTACACCTCCAACATCTACCAGCGCCGCGTTCTCGCTGGCGAGTTCCAGGTCGTCAATCC 46308 Query 113027 CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCT 113086 | || |||| | ||||| ||||| || || |||||| | | |||||| | | Sbjct 46309 CTGGCTTCTC---AAGGACCTTGTCGAGATGGGACTGTGGTCCGACGGCATGAAGAACCG 46365 Query 113087 CATGGTGAAAGCGGGTGGTTCCATTCAAAATAT 113119 ||| | | | ||| ||||||||||| || Sbjct 46366 CATCATTGCTGAGAATGGCTCCATTCAAAACAT 46398 >seq1073 Length=8604 Score = 131 bits (144), Expect = 2e-25 Identities = 168/226 (74%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATA--CA-AAGTC 102166 |||||| || |||| ||||| || || ||||| | |||||| | | || ||||| Sbjct 2582 AGTTCCCTGCATTCGCAAGAAGGCCGACTGGGCCCTCAAGTGGATCAACGACCAGAAGTC 2641 Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 || | ||| |||| || |||| || || ||||||||| ||||||||||| || Sbjct 2642 CACTTTC---GCTCAGCGTCTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGG 2698 Query 102227 TTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 | |||| |||| | || | ||||||||||||||| ||||||||||| || || ||||| Sbjct 2699 TGCCTT-TGCGTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTGACCTTCT 2757 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||| || || |||||||| ||||| ||||| ||| || ||||| Sbjct 2758 CCAATGAACTCATCTCTCGCGACGAAGGACTGCACACCGATTTTGC 2803 >seq140 Length=148099 Score = 102 bits (112), Expect = 1e-16 Identities = 160/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 16123 |||||| |||||||||||||||| |||||| || || | |||||| | || || Sbjct 86013 GGCATCGATCTCATCAATGAAGATGATGCAAGGCGCGTTCTTGCGAGCAGTGGCGAACAG 85954 Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--CGGCGGAA 16181 || || || | || ||| ||||| || |||||||| || || | | | || || Sbjct 85953 GTCACGCACTCTGGAGGGGCCGACACCGACGAACATCTCGACGAACTCGGATCCGCTGAC 85894 Query 16182 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 16241 | || |||||| || ||| || ||||| |||| ||| || || |||||||| Sbjct 85893 GCT--GAAGAAGGGAACGCCAGACTCGCCCGCCGTGGCCTTGGCAAGCAGCGTCTTACCA 85836 Query 16242 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 ||||| || || ||||||| |||||| || |||||||||||||| Sbjct 85835 GTACCCGGGGGTCCGGCGAGGATGGCACCGCGAGGAATCTTGGCGCC 85789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620732499158720