Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq164 187 3e-42
seq1073 131 2e-25
seq140 102 1e-16
>seq164
Length=162670
Score = 187 bits (206), Expect = 3e-42
Identities = 940/1473 (64%), Gaps = 41/1473 (3%)
Strand=Plus/Plus
Query 111669 GTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTC 111728
||| | ||||| ||| || |||||| | |||||| ||| || | || || ||
Sbjct 44945 GTTATCGAGACGTACAACTTGATGTCGAGCAAGCTGTTCACCCATGCCTCGCCCACTCTG 45004
Query 111729 TTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAG 111788
|||||||| || || || ||||| |||| || ||||| | | | ||||||
Sbjct 45005 TTCAACGCCGGCACCCCTCAGGCCCAACTGTCTTCGTGCTTCCTCGTCGATATGAAGGAG 45064
Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848
|| || ||| | ||||| |||| ||| |||| || ||| || || ||| ||||
Sbjct 45065 GACTCCATCGAAGGCATCTACGACACCCTCAAGACGTGCGCCATGATTTCCAAGATGGCT 45124
Query 111849 GGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGAGGT-A 111906
|| || ||||| | || ||||| | | ||| | ||| || | | || |
Sbjct 45125 GGAGGCATCGGTCTCAACGTCCATCGCATTCGTTCCACT--GGCTCCTACATCGCGGGCA 45182
Query 111907 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 111966
| || || || | ||| | | || ||||| || || || ||| ||| || ||||
Sbjct 45183 CCAACGGAACCTCCAACGGTGTCGTCCCTATGCTGCGTGTCTTCAACAACACCGCTCGCT 45242
Query 111967 ATGTAAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGCCAT 112020
|||| |||||| || | |||| || || |||| |||| |||||||| |
Sbjct 45243 ATGTCGACCAAGGCGG---TAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCCT 45299
Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGC 112080
||||||| ||| || | |||||||| || | || ||||| || | ||||||| |
Sbjct 45300 GGCACGCCGATGTCTTCGAGTTCCTCGATCTTCGCAAGAACCACGGCAAGGAGGAGGTCC 45359
Query 112081 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140
| ||||||||| ||| ||| || ||||| || |||||||||||||||||||| |||
Sbjct 45360 GTGCCCGCGATCTTTTCCTCGCCCTTTGGATCCCTGATCTCTTCATGAAGAGAGTCGAGA 45419
Query 112141 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGT-- 112198
||| || | ||| ||||| | ||||| || || |||| ||| |||| | ||
Sbjct 45420 AGAACGGTGACTGGACTCTCATGTGTCCCAACGAGTGCTCCGGCCTCGCCGA--CTGTTA 45477
Query 112199 GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--G 112256
|| ||||||||||| || | ||| ||||||||| || || || | | || |
Sbjct 45478 CGGCGAGGAGTTTGAGGCGTTGTACGAGAAGTACGAGCGCGAGGGTAAGG-GTC-GCAAG 45535
Query 112257 ACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 112315
|| | | || | || | ||||| | || || || || | || || ||||| || |
Sbjct 45536 ACCAT-CAAGGCCCAGAAGCTGTGGTACGCCATCCTTGAGGCGCAGACGGAGACGGGCAA 45594
Query 112316 ACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 112375
|| | ||||| ||||| |||||| |||| ||||| || || ||||| | |||
Sbjct 45595 CCCCTTCATGCTGTACAAGGACGCCGCCAACCGCAAGAGCAACCAGAAGAACCTCGGTAC 45654
Query 112376 GATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 112435
||| || |||||||| || || |||||| | || | | | |||||| ||
Sbjct 45655 CATCCGCAGCTCCAACCTTTGCACTGAAATCATCGAGTACTCGGCGCCTGATGAGGTTGC 45714
Query 112436 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG--ACA 112493
|| || ||||| || || | || || |||| | || || | | | || ||| ||
Sbjct 45715 CGTCTGCAACCTGGCTTCTCTGGCCCTGCCCACCTTCGTTGA-CTACA-ACGAAGGCACC 45772
Query 112494 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTT 112553
| ||| | | || | ||||| || || | |||| ||| | ||||| |
Sbjct 45773 TATGACTTCCAGAAGTTGCACGAGGTCACCCAGGTTGTCGTCCGCAACTTGAACAGGATC 45832
Query 112554 ATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 112613
||||| || ||||| ||| || || ||||| || ||| | || || ||
Sbjct 45833 ATTGACGTCAACCACTACCCTGTTCAGGAGGCCCGTAACAGCAACATGCGCCATCGCCCC 45892
Query 112614 ATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGA 112672
|| |||||||| ||||| || || || |||| ||| || | || ||| | || ||
Sbjct 45893 ATCGGTCTCGGCGTCCAGGGCCTTGCTGATGCGTTCCTTGCCCTG-CGCATGCCCTTCGA 45951
Query 112673 TTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCT 112732
|| | ||||| || |||| | || || ||||| || || |||||||| ||
Sbjct 45952 GTCTGCTGAAGCTCGAGACCTCAACAAGAAGATCTTCGAGACCATCTACCACGCCGCCCT 46011
Query 112733 TGAGGCGAGTTCGG--AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 112790
| || | | ||||||| ||| || || | || | | || || ||
Sbjct 46012 --CACCATGTCCTGCCAGTTGGCGCAGGAAGAAGGCACCTACTCCTCGTACGAAGGCTCC 46069
Query 112791 CCAGCTTCACAAGGGG-TGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTA 112849
|| | ||| ||||||| | || || | || |||||||| | || || | ||
Sbjct 46070 CCTGTTTC-CAAGGGGATTCTCCAGTACGACATGTGGGACGTCAAGCCCTCTGACCTCTG 46128
Query 112850 CGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGAT 112909
||||||||| || | || || | |||||| || | || | || |||||||| | |
Sbjct 46129 GGACTGGGACTCTTTGAAAGAGCAGATCAAGCAGCACGGCGTCCGCAACAGTCTGCTCGT 46188
Query 112910 GGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 112969
|| || ||||| || || ||| | || || |||| || || || ||||| |||||
Sbjct 46189 TGCCCCCATGCCCACTGCAAGCACTTCGCAGATTCTGGGCAACAACGAGTGCTTCGAACC 46248
Query 112970 CTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA--- 113026
||||| | |||||||| | | | | ||||| || ||||| | | |||||
Sbjct 46249 TTACACCTCCAACATCTACCAGCGCCGCGTTCTCGCTGGCGAGTTCCAGGTCGTCAATCC 46308
Query 113027 CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCT 113086
| || |||| | ||||| ||||| || || |||||| | | |||||| | |
Sbjct 46309 CTGGCTTCTC---AAGGACCTTGTCGAGATGGGACTGTGGTCCGACGGCATGAAGAACCG 46365
Query 113087 CATGGTGAAAGCGGGTGGTTCCATTCAAAATAT 113119
||| | | | ||| ||||||||||| ||
Sbjct 46366 CATCATTGCTGAGAATGGCTCCATTCAAAACAT 46398
>seq1073
Length=8604
Score = 131 bits (144), Expect = 2e-25
Identities = 168/226 (74%), Gaps = 8/226 (4%)
Strand=Plus/Plus
Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATA--CA-AAGTC 102166
|||||| || |||| ||||| || || ||||| | |||||| | | || |||||
Sbjct 2582 AGTTCCCTGCATTCGCAAGAAGGCCGACTGGGCCCTCAAGTGGATCAACGACCAGAAGTC 2641
Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226
|| | ||| |||| || |||| || || ||||||||| ||||||||||| ||
Sbjct 2642 CACTTTC---GCTCAGCGTCTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGG 2698
Query 102227 TTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285
| |||| |||| | || | ||||||||||||||| ||||||||||| || || |||||
Sbjct 2699 TGCCTT-TGCGTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTGACCTTCT 2757
Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
|||| || || |||||||| ||||| ||||| ||| || |||||
Sbjct 2758 CCAATGAACTCATCTCTCGCGACGAAGGACTGCACACCGATTTTGC 2803
>seq140
Length=148099
Score = 102 bits (112), Expect = 1e-16
Identities = 160/227 (70%), Gaps = 4/227 (2%)
Strand=Plus/Minus
Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 16123
|||||| |||||||||||||||| |||||| || || | |||||| | || ||
Sbjct 86013 GGCATCGATCTCATCAATGAAGATGATGCAAGGCGCGTTCTTGCGAGCAGTGGCGAACAG 85954
Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--CGGCGGAA 16181
|| || || | || ||| ||||| || |||||||| || || | | | || ||
Sbjct 85953 GTCACGCACTCTGGAGGGGCCGACACCGACGAACATCTCGACGAACTCGGATCCGCTGAC 85894
Query 16182 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 16241
| || |||||| || ||| || ||||| |||| ||| || || ||||||||
Sbjct 85893 GCT--GAAGAAGGGAACGCCAGACTCGCCCGCCGTGGCCTTGGCAAGCAGCGTCTTACCA 85836
Query 16242 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288
||||| || || ||||||| |||||| || ||||||||||||||
Sbjct 85835 GTACCCGGGGGTCCGGCGAGGATGGCACCGCGAGGAATCTTGGCGCC 85789
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620732499158720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |