Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq164 168 8e-37
seq1073 111 2e-19
seq140 98.7 1e-15
>seq164
Length=162670
Score = 168 bits (186), Expect = 8e-37
Identities = 573/873 (66%), Gaps = 35/873 (4%)
Strand=Plus/Minus
Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516
|| ||||| | || |||| ||||| || || |||||| | | |||||| |
Sbjct 45744 GGCAGGGCCAGAGAAGCCAGGTTGCAGACGGCAACCTCATCAGGCGCCGAGTACTCGATG 45685
Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576
||||| || || | |||||| || || || || | ||||| ||||| ||||| |
Sbjct 45684 ATTTCAGTGCAAAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGG 45625
Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636
||| || |||||||| |||||| |||| | |||||||||||||| | || || ||
Sbjct 45624 TTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGATG 45565
Query 106637 GCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCCTCGTA 106692
|| | ||||| | || | | || | |||| ||| | || | ||||| ||||||
Sbjct 45564 GCGTACCACAGCTTCTGGGCCTTG----ATGGTCTTGCGACCCTTACCCTCGCGCTCGTA 45509
Query 106693 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGC-CTTGT 106751
||| ||| | || ||||||||||| || ||||| ||| || || || || ||
Sbjct 45508 CTTCTCGTACAACGCCTCAAACTCCTCGCCGTAACAGTCGGCGAGGCC-GGAGCACTCGT 45450
Query 106752 CTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 106811
||||| | |||| ||| | ||| || ||| || | ||||||||| || || || |
Sbjct 45449 TGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGATCAGGGA 45390
Query 106812 TCCACAGG--GATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTC 106868
|||| ||| || |||| ||||| | ||| || |||| || | || ||||| |
Sbjct 45389 TCCAAAGGGCGAGGAAA--AGATCGCGGGCACGGA-CCTCCTCCTTGCCGTGGTTCTTGC 45333
Query 106869 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA------ 106922
| | || |||||||| | || ||| |||||||| |||||||| |||| ||||
Sbjct 45332 GAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCAC 45273
Query 106923 TAGATCCCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAA 106982
|| || ||| | || |||| | |||||||| || ||| ||| || || || |
Sbjct 45272 CAGGTCGCTTGTTA---CCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCA 45216
Query 106983 GCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGC 107040
|||| || | | ||| | || || || || ||| ||| || ||| | |||
Sbjct 45215 GCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAG--CCAGTGGA 45158
Query 107041 TCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTC 107100
| | ||||| || | || || || |||||| ||| || || || |||
Sbjct 45157 ACGAATGCGATGGACGTTGAGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCACGT 45098
Query 107101 CGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACT 107160
| | || || | ||||| || | ||| ||||||||||| | ||| ||||||||
Sbjct 45097 CTTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGA 45038
Query 107161 GGACATCTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA 107219
|||| || || || || || || || ||||| || || || | || || |||||
Sbjct 45037 AGACAGTTG-GGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAAC- 44980
Query 107220 TACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGAT 107277
| |||| |||||| || ||| ||||| | || |||| || || || ||
Sbjct 44979 -AGCTTGCTCGACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCAAAT 44921
Query 107278 GCCGATGGCCACACGCATAAACATGTATTGGGG 107310
||| | || |||||||||| ||||| ||| ||
Sbjct 44920 GCCAACAGCGACACGCATAATCATGTGTTGCGG 44888
>seq1073
Length=8604
Score = 111 bits (122), Expect = 2e-19
Identities = 289/438 (66%), Gaps = 2/438 (0%)
Strand=Plus/Minus
Query 116995 ACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAAT 117054
|| ||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||
Sbjct 3082 ACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATAAAGTCAAAG 3023
Query 117055 GGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGATCCGACACA 117114
||||| | | || | | | || | || ||||| || | ||||
Sbjct 3022 GGATTGCTTGACTTGTAGACCTTTTCATTGCCGAGGGTAACCAGCAGACGGTCGGCCACA 2963
Query 117115 TACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACATGGGAGTGCG 117174
| |||||||||| ||| | || ||||| |||| |||| || || || ||
Sbjct 2962 AATTCAATGTACTGCTTCATGAGGTTGGAATTCATCCCGAGGAGACCGCAGGGCAGAGCC 2903
Query 117175 TCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTTTCG 117234
|| || |||| | | |||||||| || || || | |||| | |||| |
Sbjct 2902 TCGGTGAGGAACTCCTGCTCAATCTTGACGGCGTCGACAATGATGTCCCGGATGACCTGC 2843
Query 117235 GTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTCCTGGTGGAGACCC 117294
| |||| | | || | ||||| |||||| || ||| || ||
Sbjct 2842 TTGCTGGGGCGGTGCTTCAGGTGGGAGTAGAGCAGGCAGGCAAAATCGGTGTGCAGTCCT 2783
Query 117295 TCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCTTC 117354
|| || || || || |||||||| |||||| ||||| ||||||||||| ||||||||
Sbjct 2782 TCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGCCAGGCATGAGACCACGCTTCTTG 2723
Query 117355 AACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGC 117413
| |||| | || | |||| || | |||||||||||||| ||||| ||| || || ||
Sbjct 2722 AGCCAAAAGATGGACGCA-AAGGCACCGGAGAAGAAGATGCCCTCAACAGCAGCGAAGGC 2664
Query 117414 AAAAAGGCGCTCGGCGAA 117431
| ||| |||| |||||
Sbjct 2663 GACAAGACGCTGAGCGAA 2646
>seq140
Length=148099
Score = 98.7 bits (108), Expect = 1e-15
Identities = 159/227 (70%), Gaps = 4/227 (2%)
Strand=Plus/Minus
Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430
|||||| |||||||||||||||| || || || || | ||| || | | || ||
Sbjct 86013 GGCATCGATCTCATCAATGAAGATGATGCAAGGCGCGTTCTTGCGAGCAGTGGCGAACAG 85954
Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--CGGCGGAA 9488
|| || || || || ||| ||||| || |||||||| || || | | | || ||
Sbjct 85953 GTCACGCACTCTGGAGGGGCCGACACCGACGAACATCTCGACGAACTCGGATCCGCTGAC 85894
Query 9489 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548
| || |||||| || ||| || ||||| |||| ||| || || ||||||||
Sbjct 85893 GCT--GAAGAAGGGAACGCCAGACTCGCCCGCCGTGGCCTTGGCAAGCAGCGTCTTACCA 85836
Query 9549 GTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595
||||| || || ||||||| |||||| || ||||||||||||||
Sbjct 85835 GTACCCGGGGGTCCGGCGAGGATGGCACCGCGAGGAATCTTGGCGCC 85789
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589971389806240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |