Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq164 168 8e-37 seq1073 111 2e-19 seq140 98.7 1e-15 >seq164 Length=162670 Score = 168 bits (186), Expect = 8e-37 Identities = 573/873 (66%), Gaps = 35/873 (4%) Strand=Plus/Minus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || ||||| | || |||| ||||| || || |||||| | | |||||| | Sbjct 45744 GGCAGGGCCAGAGAAGCCAGGTTGCAGACGGCAACCTCATCAGGCGCCGAGTACTCGATG 45685 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 ||||| || || | |||||| || || || || | ||||| ||||| ||||| | Sbjct 45684 ATTTCAGTGCAAAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGG 45625 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||| || |||||||| |||||| |||| | |||||||||||||| | || || || Sbjct 45624 TTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGATG 45565 Query 106637 GCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCCTCGTA 106692 || | ||||| | || | | || | |||| ||| | || | ||||| |||||| Sbjct 45564 GCGTACCACAGCTTCTGGGCCTTG----ATGGTCTTGCGACCCTTACCCTCGCGCTCGTA 45509 Query 106693 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGC-CTTGT 106751 ||| ||| | || ||||||||||| || ||||| ||| || || || || || Sbjct 45508 CTTCTCGTACAACGCCTCAAACTCCTCGCCGTAACAGTCGGCGAGGCC-GGAGCACTCGT 45450 Query 106752 CTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 106811 ||||| | |||| ||| | ||| || ||| || | ||||||||| || || || | Sbjct 45449 TGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGATCAGGGA 45390 Query 106812 TCCACAGG--GATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTC 106868 |||| ||| || |||| ||||| | ||| || |||| || | || ||||| | Sbjct 45389 TCCAAAGGGCGAGGAAA--AGATCGCGGGCACGGA-CCTCCTCCTTGCCGTGGTTCTTGC 45333 Query 106869 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA------ 106922 | | || |||||||| | || ||| |||||||| |||||||| |||| |||| Sbjct 45332 GAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCAC 45273 Query 106923 TAGATCCCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAA 106982 || || ||| | || |||| | |||||||| || ||| ||| || || || | Sbjct 45272 CAGGTCGCTTGTTA---CCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCA 45216 Query 106983 GCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGC 107040 |||| || | | ||| | || || || || ||| ||| || ||| | ||| Sbjct 45215 GCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAG--CCAGTGGA 45158 Query 107041 TCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTC 107100 | | ||||| || | || || || |||||| ||| || || || ||| Sbjct 45157 ACGAATGCGATGGACGTTGAGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCACGT 45098 Query 107101 CGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACT 107160 | | || || | ||||| || | ||| ||||||||||| | ||| |||||||| Sbjct 45097 CTTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGA 45038 Query 107161 GGACATCTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA 107219 |||| || || || || || || || ||||| || || || | || || ||||| Sbjct 45037 AGACAGTTG-GGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAAC- 44980 Query 107220 TACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGAT 107277 | |||| |||||| || ||| ||||| | || |||| || || || || Sbjct 44979 -AGCTTGCTCGACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCAAAT 44921 Query 107278 GCCGATGGCCACACGCATAAACATGTATTGGGG 107310 ||| | || |||||||||| ||||| ||| || Sbjct 44920 GCCAACAGCGACACGCATAATCATGTGTTGCGG 44888 >seq1073 Length=8604 Score = 111 bits (122), Expect = 2e-19 Identities = 289/438 (66%), Gaps = 2/438 (0%) Strand=Plus/Minus Query 116995 ACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAAT 117054 || ||||||||||||||||||||||| ||| ||||| ||||| |||||||||||||| Sbjct 3082 ACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATAAAGTCAAAG 3023 Query 117055 GGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGATCCGACACA 117114 ||||| | | || | | | || | || ||||| || | |||| Sbjct 3022 GGATTGCTTGACTTGTAGACCTTTTCATTGCCGAGGGTAACCAGCAGACGGTCGGCCACA 2963 Query 117115 TACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACATGGGAGTGCG 117174 | |||||||||| ||| | || ||||| |||| |||| || || || || Sbjct 2962 AATTCAATGTACTGCTTCATGAGGTTGGAATTCATCCCGAGGAGACCGCAGGGCAGAGCC 2903 Query 117175 TCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTTTCG 117234 || || |||| | | |||||||| || || || | |||| | |||| | Sbjct 2902 TCGGTGAGGAACTCCTGCTCAATCTTGACGGCGTCGACAATGATGTCCCGGATGACCTGC 2843 Query 117235 GTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTCCTGGTGGAGACCC 117294 | |||| | | || | ||||| |||||| || ||| || || Sbjct 2842 TTGCTGGGGCGGTGCTTCAGGTGGGAGTAGAGCAGGCAGGCAAAATCGGTGTGCAGTCCT 2783 Query 117295 TCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCTTC 117354 || || || || || |||||||| |||||| ||||| ||||||||||| |||||||| Sbjct 2782 TCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGCCAGGCATGAGACCACGCTTCTTG 2723 Query 117355 AACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGC 117413 | |||| | || | |||| || | |||||||||||||| ||||| ||| || || || Sbjct 2722 AGCCAAAAGATGGACGCA-AAGGCACCGGAGAAGAAGATGCCCTCAACAGCAGCGAAGGC 2664 Query 117414 AAAAAGGCGCTCGGCGAA 117431 | ||| |||| ||||| Sbjct 2663 GACAAGACGCTGAGCGAA 2646 >seq140 Length=148099 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430 |||||| |||||||||||||||| || || || || | ||| || | | || || Sbjct 86013 GGCATCGATCTCATCAATGAAGATGATGCAAGGCGCGTTCTTGCGAGCAGTGGCGAACAG 85954 Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--CGGCGGAA 9488 || || || || || ||| ||||| || |||||||| || || | | | || || Sbjct 85953 GTCACGCACTCTGGAGGGGCCGACACCGACGAACATCTCGACGAACTCGGATCCGCTGAC 85894 Query 9489 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 | || |||||| || ||| || ||||| |||| ||| || || |||||||| Sbjct 85893 GCT--GAAGAAGGGAACGCCAGACTCGCCCGCCGTGGCCTTGGCAAGCAGCGTCTTACCA 85836 Query 9549 GTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 ||||| || || ||||||| |||||| || |||||||||||||| Sbjct 85835 GTACCCGGGGGTCCGGCGAGGATGGCACCGCGAGGAATCTTGGCGCC 85789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589971389806240