Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq164 379 4e-100
seq1073 170 4e-37
>seq164
Length=162670
Score = 379 bits (420), Expect = 4e-100
Identities = 1061/1605 (66%), Gaps = 90/1605 (6%)
Strand=Plus/Minus
Query 212552 CACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTT 212611
||| || ||||| | || |||||||||| | || || || |||||||| || |||||
Sbjct 46648 CACTGTGAACTGGATGGGGGCAGCAGCAGCTTGAGTACGCAGGTAGTACATTCCAGTCTT 46589
Query 212612 TAGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATATTCT 212670
|| ||| |||||| | |||||| |||| ||| |||| | || ||
Sbjct 46588 CAGACCCAGCTTCCAGCCCGCGAAGTGCAT-GCTGGTGA---TCTTGCCC---ATGGTCG 46536
Query 212671 GGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCC 212730
| || | || || || | ||| ||||| ||| |||||| ||||| | | | |
Sbjct 46535 GATCTT--TCATG-------TGAATGTTGAGGGATTGAGACTGGTCGATGAAGGCGCCAC 46485
Query 212731 TGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTT 212790
||| || ||||| | || || | |||||| | ||||||||| |||||| | |
Sbjct 46484 GGTCGGCAGCCATCTGTACGACGGTACGCTGGGAAATCTCCCACACCGTCTTGTACAAGG 46425
Query 212791 CTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGC- 212849
| |||| || | |||| | ||||||||| || | || || || |||||
Sbjct 46424 CCTTGACCTCGGCAGGGATGTTGGGGATGTTTTGAATGGAGCC-------ATTCTCAGCA 46372
Query 212850 -TGCAGGCG------CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAG 212902
|| | ||| |||| | ||| ||| || ||| | | ||| ||||| ||
Sbjct 46371 ATG-ATGCGGTTCTTCATGCCGTCGGACCACAGTCCCATCTCGACAAGGTCCTTGAGAAG 46313
Query 212903 GTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGT 212962
|| ||||| | |||||| || || | ||| || | | |||||| | ||| || ||
Sbjct 46312 CCAGGGATTGACGACCTGGAACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTGGAGGT 46253
Query 212963 GTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGG 213022
||| || |||| || ||||||||| ||||||||||| | |||||| || |||||||||||
Sbjct 46252 GTAAGGTTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGCATGGG 46193
Query 213023 AGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCA 213082
|| || || |||||||| | || ||||||| ||| | |||| | |
Sbjct 46192 GGCAACGAGCAGACTGTTGCGGACGCCGTGCTGCTTGATCTG---------CTCTTTCAA 46142
Query 213083 ---GTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGAT 213139
|||||| | ||||| |||| | ||| |||| ||||||||| |||| | ||
Sbjct 46141 AGAGTCCCAG-TCCCAGA--GGTCAGAGGGCTTGACGTCCCACATGTCGTACTGGAGAAT 46085
Query 213140 GCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTC 213199
|| ||| || ||| ||| | ||| |||||||||| ||| | |||| |||| ||
Sbjct 46084 CCCCTTGGAAACAGGGGAGCCTTCGTACGAGGAGTAGGTGCCTTCTTCCTGCGCCAACTG 46025
Query 213200 GCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTT 213259
||||||| ||||| |||| ||||||||| || || |||| | ||||||| | ||
Sbjct 46024 GCAGGACATGGTGAGGGCGGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGT-CTC 45966
Query 213260 G-GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGA 213318
| || || | ||| ||||||||| || | ||||| ||||||| || |||||||
Sbjct 45965 GAGCTTCAGCAGACTCGAAGGGCATGCGCAGGGCAAGGAACGCATCAGCAAGGCCCTGGA 45906
Query 213319 CCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAA 213378
| |||| |||||||| | || | || ||| || | ||||| | |||||
Sbjct 45905 CGCCGAGACCGATGGGGCGATGGCGCATGTTGCTGTTACGGGCCTCCTGAACAGGGTAGT 45846
Query 213379 AGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGT 213438
|||| ||| |||||| |||| | ||||||| | | || | |||||| | | ||
Sbjct 45845 GGTTGACGTCAATGATCCTGTTCAAGTTGCGGACGACAACCTGGGTGACCTCGTGCA--- 45789
Query 213439 ACTCGTGATTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGC 213492
||| || ||| | ||| || || | || || |||||||| |
Sbjct 45788 ACTTCTG---GAAGTCATAGGTGCCTTCGTTGTAGTCAACGAAGGTGGGCAGGGCCAGAG 45732
Query 213493 TGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACA 213552
||||||||||| ||||| ||||| | || | | |||||| ||||| || ||||| |
Sbjct 45731 AAGCCAGGTTGCAGACGGCAACCTCATCAGGCGCCGAGTACTCGATGATTTCAGTGCAAA 45672
Query 213553 GGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCT 213612
||||| || |||||||| || ||||||| ||||| ||| |||||| | ||||
Sbjct 45671 GGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCT 45612
Query 213613 TGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGT 213672
|||| |||||| ||||| || ||||| ||| | | | || || | ||| || |
Sbjct 45611 TGTACAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGATGGCGTACCACAGCT 45552
Query 213673 ACCTGGCCTTGACCACC---CG--CCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTA 213727
| |||||||| | || ||| || ||| ||| |||||||| |||||
Sbjct 45551 TCTGGGCCTTGATGGTCTTGCGACCCTTACC-CTC---GCG----CTCGTACTTCTCGTA 45500
Query 213728 GAGCTCGTTGAATTCGTGGCCCCAGACCCT-GTCCAGTCCCGGACAGGATGCGGGACACA 213786
| | | | || || | ||| | || | | | || || | || ||||||||
Sbjct 45499 CAACGCCTCAAACTCCTCGCCGTA-ACAGTCGGCGAGGCCGGAGCACTCGTTGGGACACA 45441
Query 213787 TGAGGCTCCAGTCCCCG-TCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGC 213845
|||| ||||||| ||| || |||| |||||||| |||||| || || |||| ||| ||
Sbjct 45440 TGAGAGTCCAGTCACCGTTCTTCTC-GACTCTCTTCATGAAGAGATCAGGGATCCAAAGG 45382
Query 213846 GCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGA 213905
||| ||| || || | || | ||| ||| || ||| ||||| ||||| ||
Sbjct 45381 GCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGATCGAGG 45322
Query 213906 AAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG 213965
|| || |||| || |||||||| ||||| | ||||||||| ||||| || || | ||||
Sbjct 45321 AACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTG 45262
Query 213966 ---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGC 214022
||||| ||||| || | || ||||||||| ||||| | || || |
Sbjct 45261 TTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGGACGACA 45202
Query 214023 CCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATG 214082
|||||||| ||||||||| ||||| || || ||||| | || | | ||| |||
Sbjct 45201 CCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAAC---GAATGC-GATG 45146
Query 214083 GA----GAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCA 214123
|| ||| || ||||| || || |||||| |||||||||||
Sbjct 45145 GACGTTGAGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCA 45101
>seq1073
Length=8604
Score = 170 bits (188), Expect = 4e-37
Identities = 345/508 (68%), Gaps = 17/508 (3%)
Strand=Plus/Minus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
|||||| || | || | |||||||||||||| ||||| || | | |||||||||||
Sbjct 3095 CTGGTAATCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTC 3036
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCA 47957
||| ||| ||||| ||| || || || ||| | ||| || || ||||||
Sbjct 3035 CATAAAGTCAAAGGGATTGCTTGACTTGTAGACCTTT-TCATTGCCGAGGGTAACCAGCA 2977
Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017
| | || || || | || ||||| | ||||||| || ||||| || | |||
Sbjct 2976 GACGGTCGGCCACAAATTCAATGTACTGCTTCATGAGGTTGGAATTCATCCCGAGGAGAC 2917
Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077
||||| ||||| ||||| ||||||| ||| |||| ||||| || | | || |
Sbjct 2916 CGCAGGGCAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGACGGCGTCGACAATGATGT 2857
Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTT------GGCATAGAGCATGC 48131
| || ||| ||| ||| || | ||||||| || ||||||| ||
Sbjct 2856 CC----CGGATGAC-CTGC----TTGCTGGGGCGGTGCTTCAGGTGGGAGTAGAGCAGGC 2806
Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191
||||||| || |||||| |||||||| || |||||| | ||||||||| || |
Sbjct 2805 AGGCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGC 2746
Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251
||||||||| || | || |||||||| || || | ||| || | || ||||||||||
Sbjct 2745 CAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAAGA 2686
Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311
||||||| || || ||||| ||| || | || |||||| | |||| ||| ||
Sbjct 2685 TGCCCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAAAGTGGACTTCTGGTCGTTGA 2626
Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTT 48339
|||| || |||||||| ||||||||
Sbjct 2625 TCCACTTGAGGGCCCAGTCGGCCTTCTT 2598
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931517942051840
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