Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq1073 111 2e-19
>seq1073
Length=8604
Score = 111 bits (122), Expect = 2e-19
Identities = 289/438 (66%), Gaps = 2/438 (0%)
Strand=Plus/Plus
Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130
||||| |||| ||| | || || || ||| ||||| |||||||||||||| | ||
Sbjct 2646 TTCGCTCAGCGTCTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCCTT- 2704
Query 65131 TGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189
|||| | || | |||| | |||||||| ||||||||||| ||||| |||||| |||||
Sbjct 2705 TGCGTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTGACCTTCTCCAATGA 2764
Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTT 65249
||| || || || || || || || ||| || |||||| ||||| | |
Sbjct 2765 ACTCATCTCTCGCGACGAAGGACTGCACACCGATTTTGCCTGCCTGCTCTACTCCCACCT 2824
Query 65250 GCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGA 65309
| | | |||| | | |||| | |||| | || || || |||||||
Sbjct 2825 GAAGCACCGCCCCAGCAAGCAGGTCATCCGGGACATCATTGTCGACGCCGTCAAGATTGA 2884
Query 65310 GAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGAT 65369
| | | |||| || || || || || || |||| |||| ||||| || | ||
Sbjct 2885 GCAGGAGTTCCTCACCGAGGCTCTGCCCTGCGGTCTCCTCGGGATGAATTCCAACCTCAT 2944
Query 65370 GTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCCAT 65429
| |||||||||| | |||| | || ||||| || | || | |
Sbjct 2945 GAAGCAGTACATTGAATTTGTGGCCGACCGTCTGCTGGTTACCCTCGGCAATGAAAAGGT 3004
Query 65430 TTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAA 65489
| || | | ||||| |||||||||||||| ||||| ||||| ||| ||||||||
Sbjct 3005 CTACAAGTCAAGCAATCCCTTTGACTTTATGGAGAACATCTCCCTTGGTGGCAAGACCAA 3064
Query 65490 CTTCTTTGAGAAGCGAGT 65507
||||||||||||||| ||
Sbjct 3065 CTTCTTTGAGAAGCGTGT 3082
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596560084714880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |