Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1073 111 2e-19 >seq1073 Length=8604 Score = 111 bits (122), Expect = 2e-19 Identities = 289/438 (66%), Gaps = 2/438 (0%) Strand=Plus/Plus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 ||||| |||| ||| | || || || ||| ||||| |||||||||||||| | || Sbjct 2646 TTCGCTCAGCGTCTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCCTT- 2704 Query 65131 TGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||| | || | |||| | |||||||| ||||||||||| ||||| |||||| ||||| Sbjct 2705 TGCGTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTGACCTTCTCCAATGA 2764 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTT 65249 ||| || || || || || || || ||| || |||||| ||||| | | Sbjct 2765 ACTCATCTCTCGCGACGAAGGACTGCACACCGATTTTGCCTGCCTGCTCTACTCCCACCT 2824 Query 65250 GCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGA 65309 | | | |||| | | |||| | |||| | || || || ||||||| Sbjct 2825 GAAGCACCGCCCCAGCAAGCAGGTCATCCGGGACATCATTGTCGACGCCGTCAAGATTGA 2884 Query 65310 GAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGAT 65369 | | | |||| || || || || || || |||| |||| ||||| || | || Sbjct 2885 GCAGGAGTTCCTCACCGAGGCTCTGCCCTGCGGTCTCCTCGGGATGAATTCCAACCTCAT 2944 Query 65370 GTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCCAT 65429 | |||||||||| | |||| | || ||||| || | || | | Sbjct 2945 GAAGCAGTACATTGAATTTGTGGCCGACCGTCTGCTGGTTACCCTCGGCAATGAAAAGGT 3004 Query 65430 TTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAA 65489 | || | | ||||| |||||||||||||| ||||| ||||| ||| |||||||| Sbjct 3005 CTACAAGTCAAGCAATCCCTTTGACTTTATGGAGAACATCTCCCTTGGTGGCAAGACCAA 3064 Query 65490 CTTCTTTGAGAAGCGAGT 65507 ||||||||||||||| || Sbjct 3065 CTTCTTTGAGAAGCGTGT 3082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596560084714880