Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq164 170 2e-37 seq63 118 1e-21 >seq164 Length=162670 Score = 170 bits (188), Expect = 2e-37 Identities = 1020/1621 (63%), Gaps = 52/1621 (3%) Strand=Plus/Minus Query 138409 ATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGA 138468 || ||||||||| || || | ||||||||||| || ||||| | ||| |||| Sbjct 46398 ATGTTTTGAATGGAGCCATTCTCAGCAATGATGCGGTTCTTCATGCCGTCGGACCACAGT 46339 Query 138469 TTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAAT 138528 || || || | ||| || | || | || | |||||| || || || || | Sbjct 46338 CCCATCTCGACAAGGTCCTTGAGAAGCCAGGGATTGACGACCTGGAACTCGCCAGCGAGA 46279 Query 138529 ACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATC 138588 || || || ||| |||||| |||| |||| || || | |||||||| ||||||||| Sbjct 46278 ACGCGGCGCTGGTAGATGTTGGAGGTGTAAGGTTCGAAGCACTCGTTGTTGCCCAGAATC 46219 Query 138589 TGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGC 138648 || | ||| | || || |||||| || || | ||| || || | ||||| || Sbjct 46218 TGCGAAGTGCTTGCAGTGGGCATGGGGGCAACGAGCAGACTGTTGCGGACGCCGTGCTGC 46159 Query 138649 TTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATA 138708 ||||| | || || | || ||||||||| | || || || || |||||| Sbjct 46158 TTGATCTGCTCTTTCAAAGAGTCCCAGTCCCAGAGGTCAGAGGGCTTGACGTCCCACATG 46099 Query 138709 TCGTACTGTAACATTCCC----AAACTTGCGGGACTGCCTTCGTACGAATCGTATACACC 138764 |||||||| | || ||| |||| |||| |||||||||||| ||| || Sbjct 46098 TCGTACTGGAGAATCCCCTTGGAAAC--AGGGGA--GCCTTCGTACGAGGAGTAGGTGCC 46043 Query 138765 AAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAAT 138824 || |||||||||| | | | ||| || | | ||| || || ||| || Sbjct 46042 TTCTTCCTGCGCCAACTGGCAGGACATGGTGAGGGCGGCGTGGTAGATGGTCTCGAAGAT 45983 Query 138825 CTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGC 138884 || || ||||| ||| || || || |||| | |||||||| || |||||| Sbjct 45982 CTTCTTGTTGAGGTCTCGAGCTTCAGCAGACTCGAAGGGCATGCGCAGGGCAAGGAACGC 45923 Query 138885 GTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGC 138944 || || || || || ||||| | |||| ||||||||||||| || ||| || | Sbjct 45922 ATCAGCAAGGCCCTGGACGCCGAGACCGATGGGGCGATGGCGCA----TGTTGCTGTTAC 45867 Query 138945 GG----CTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCA 139000 || | | | ||| || | ||| || || ||||| |||| || || || ||||| | Sbjct 45866 GGGCCTCCTGAACAGGGTAGTGGTTGACGTCAATGATCCTGTTCAAGTTGCGGACGACAA 45807 Query 139001 CCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACG-ACG 139059 ||| || | | || | || || || ||||| |||||| ||| ||| | | Sbjct 45806 CCTGGGTGACCTCGTGCAACTTCTGGAAGTCATAGGTGCCTTCGTTGTAGTCAACGAAGG 45747 Query 139060 TCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCG 139119 | | || | || | || || | |||||| || || || || || || | Sbjct 45746 TGGGCA------GGGCCAGA----GAAGCCAGGTTGCAGACGGCAACCTCATCAGGCGCC 45697 Query 139120 CTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGA 139179 ||| |||| ||||| | || | || | ||| ||||| | || | || Sbjct 45696 GAGTACTCGATGATTTCAGTGCAAAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGG 45637 Query 139180 TTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGT 139239 ||||| || ||||| || || ||||| ||||| | || |||| || ||| || Sbjct 45636 TTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGTCTCCGTCTGC 45577 Query 139240 GTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTAT----TTGACGCACGTAAAGTTC 139295 | ||| | ||| | ||| | | || | || ||| | | || | Sbjct 45576 GCCTCAAGGATGGCGTACCACAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTA----CC 45521 Query 139296 GTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATC 139355 |||||||||||||| ||||| | | || || || ||||| ||| | || | Sbjct 45520 CTCGCGCTCGTACTTCTCGTACAACGCCTCAAACTCCTCGCCGTAACAGTCGGCGAGGCC 45461 Query 139356 GCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAA 139415 | |||| || ||||||||||| | ||| | |||||| || ||| | | ||||||| Sbjct 45460 GGAGCACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAA 45401 Query 139416 CAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCAT 139475 ||||| || ||||| | |||| | | |||||| || || ||| || | Sbjct 45400 GAGATCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCC-TTGCCGT 45342 Query 139476 GTTACGTTTCATG-TTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGG 139534 | | | | | | | ||||| || || || || |||||||| || || || ||||||| Sbjct 45341 GGTTCTTGCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGG 45282 Query 139535 CCATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATA 139591 | | || || || ||| || ||||| ||||| | || | | || ||||| | Sbjct 45281 CGAAGGCACCAGGTCGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGA 45222 Query 139592 CGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG--GGA-CTGT 139648 | |||| ||| || | | |||| | | ||||||||||||| |||| ||| | Sbjct 45221 CACGCAGCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAG 45162 Query 139649 TGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAA 139708 || | || | | ||| || |||| ||||| || || | | ||||| || | Sbjct 45161 TG---GAACGAATGCGATGGACGTTGAGACCGATGCCTCCAGCCATCTTGGAAATCATGG 45105 Query 139709 CGCA-ATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGA 139767 |||| || | | || ||||| || ||| ||| ||| |||| ||| ||| || Sbjct 45104 CGCACGTCTTG-AGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGG 45046 Query 139768 AAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGC 139827 ||||| || || ||||| | | |||||||| |||||||| || || || Sbjct 45045 AAGCACGAAGACAGTTGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGG 44986 Query 139828 GTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCG 139887 ||||||| | |||||||||| | |||||| ||||| ||| | ||| | || Sbjct 44985 GTGAACAGCTTGCTCGACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCC 44926 Query 139888 TGGATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCG 139947 || || |||| ||| ||||| | ||| ||||| || ||||| | | ||| ||| Sbjct 44925 CAAATGCCAACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATCG 44866 Query 139948 AtttttttCAGATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAAT 140005 || || || || ||| |||| | ||||||| |||| ||||| |||||||| | Sbjct 44865 ATCTTGAGGAGGTACGACC--TCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGT 44808 Query 140006 C 140006 | Sbjct 44807 C 44807 >seq63 Length=145700 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || ||||| ||||| || || || || || | || Sbjct 39373 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 39432 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || ||||| || Sbjct 39433 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 39492 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||| ||||| || ||||| ||||| | | | |||| || || ||| Sbjct 39493 CAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAAC 39552 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 || || ||||| || || || ||| ||||| |||| |||| || || || Sbjct 39553 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTGCGTGGTGGTGG 39602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449890424133280