Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq181 165 1e-34 seq164 147 3e-29 seq1073 120 5e-21 seq328 116 6e-20 seq35 116 6e-20 seq539 102 1e-15 seq474 87.8 3e-11 >seq181 Length=205887 Score = 165 bits (182), Expect = 1e-34 Identities = 216/299 (72%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 2019141 GGCGTGGACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGACCTGCCG 2019200 ||| | ||||| || |||| ||||||| ||| ||| | | || ||||||| Sbjct 71266 GGCATCGACGTTGTTCGTAATCGCATCAAGGGCTTCGCACAGAAGAAAGTCACCCTGCCG 71207 Query 2019201 CCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAG 2019260 | |||||||||||| || |||||||||| || |||||| || | || |||| || ||| Sbjct 71206 CAGGGCCGCCACAAGCTGGTCATCCTCGACGAAGCCGACAGCATGACATCGGGCGCGCAG 71147 Query 2019261 CAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGC 2019320 ||||||||||| || ||||||| ||| |||||||||||||||| ||| | |||||| Sbjct 71146 CAGGCCCTCCGCCGAACGATGGAAATCTACTCCAACACGACGCGGTTCGCGTTTGCCTGC 71087 Query 2019321 AACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCG 2019380 ||| |||| | | ||||||| | || ||| || ||||||||| |||| | || Sbjct 71086 AACCAGTCGAACAAGATCATCGAGCCGCTGCAGTCGCGCTGCGCCATCCTGCGGTACGCC 71027 Query 2019381 CGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGT 2019439 | |||||||||| ||| | | | ||| |||| |||| || || || || ||||| Sbjct 71026 AGACTCACCGACGAGCAGGTAGTCAAGCGGCTGCTGCAGATCATTGAGGCGGAGAAGGT 70968 >seq164 Length=162670 Score = 147 bits (162), Expect = 3e-29 Identities = 188/259 (73%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||||||||| || |||| ||| ||||| || ||||| || || | |||||||| Sbjct 45252 TGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGGACGACACCGTTGGAG 45193 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 |||||||||||||| | ||||| ||| | || || | || || | ||| Sbjct 45192 GTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAACGAATGCGATGGACGTTGAGACCG 45133 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 ||||| || ||| |||||| || | |||||| | || || || ||||||||||| ||| Sbjct 45132 ATGCCTCCAGCCATCTTGGAAATCATGGCGCACGTCTTGAGGGTGTCGTAGATGCCTTCG 45073 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 || ||||| ||||||| || | || |||||||| || ||| | | | |||||| Sbjct 45072 ATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAAGACAGTTGGGCCTGAGGGGTGCCG 45013 Query 2073781 GCATTGAAGAGCGTGGGCG 2073799 || ||||| || ||||||| Sbjct 45012 GCGTTGAACAGAGTGGGCG 44994 Score = 109 bits (120), Expect = 9e-18 Identities = 295/455 (65%), Gaps = 12/455 (3%) Strand=Plus/Minus Query 2071564 GGCGACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGT 2071621 |||| ||| ||| || || || ||||| ||||||| | || |||| || |||| Sbjct 45702 GGCGCCGAGTACTCGATGATTTCAGTGCAAAGGTTGGAG--CTGCGGATGGTACCGAGGT 45645 Query 2071622 TCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCT 2071681 ||| ||||||||| | ||||| |||||||||||| ||||||| |||| ||||||| Sbjct 45644 TCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGTCT 45585 Query 2071682 CGATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGC 2071741 | |||||||| | |||||| |||| | || |||| || | || ||| Sbjct 45584 CCGTCTGCGCCTCAAGGATGGCGTACCACA----GCTTCTGGGCCTTGATGGTCTTGCGA 45529 Query 2071742 GGC----CCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCG 2071797 | ||| | | || ||||| | |||||| || ||| Sbjct 45528 CCCTTACCCTCGCGCTCGTACTTCTCGTACAACGCCTCAAACTCCTCGCCGTAACAGTCG 45469 Query 2071798 TGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGG 2071857 ||||||| |||| || || | ||| | |||||| ||| || | || | Sbjct 45468 GCGAGGCCGGAGCACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTC 45409 Query 2071858 CGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCC 2071917 ||| || || || |||| ||| || || |||||||| || ||| ||||||| Sbjct 45408 TTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCC 45349 Query 2071918 TTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGG 2071977 |||||||||||||| || ||||| | |||| || ||||||||||| ||||| ||| Sbjct 45348 TTGCCGTGGTTCTTGCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGG 45289 Query 2071978 TAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||| ||| ||||| || |||||| ||||| Sbjct 45288 TAGATGGCGAAGGCACCAGGTCGCTTGTTACCGCC 45254 >seq1073 Length=8604 Score = 120 bits (132), Expect = 5e-21 Identities = 145/194 (75%), Gaps = 9/194 (5%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||||||| ||| | ||| ||| ||| ||||| |||||||| || |||||| Sbjct 2785 CCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGCCAGGCATGAGACCACGCTTC 2726 Query 794401 TTGAGCCAAAAGATGG-CACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 |||||||||||||||| | || || || ||||| ||||||||||| || || || || Sbjct 2725 TTGAGCCAAAAGATGGACGCA-AAGGCACCGGAGAAGAAGATGCCCTCAACAGCAGCGAA 2667 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT--TTGTTGATCCACTTCATCGCC 794517 | |||| || |||| || ||||| || | ||| | |||||||||||| | ||| Sbjct 2666 GGCGACAAGACGCTGAGCGAAAGT-----GGACTTCTGGTCGTTGATCCACTTGAGGGCC 2612 Query 794518 CACTCTGCCTTTTT 794531 || || ||||| || Sbjct 2611 CAGTCGGCCTTCTT 2598 Score = 113 bits (124), Expect = 7e-19 Identities = 175/250 (70%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 ||||||| ||||| || ||| | || ||| ||| || |||||||||||||| | | Sbjct 3108 TGACGCCAGCCTTCTGGTAATCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAA 3049 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | || || ||| | | |||| ||| || |||| Sbjct 3048 GGGAGATGTTCTCCATAAAGTCAAAGGGATTGCTTGACTTGTAGACCTTTTCATTGCCGA 2989 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | ||||| |||||||| || |||||||||||||| ||||||| || |||| Sbjct 2988 GGGTAACCAGCAGACGGTCGGCCACAAATTCAATGTACTGCTTCATGAGGTTGGAATTCA 2929 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 | |||| ||| | |||||| | |||| ||| ||||| | ||| |||| |||||| | Sbjct 2928 TCCCGAGGAGACCGCAGGGCAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGACGGCGT 2869 Query 794131 CGATGATGAT 794140 ||| ||||| Sbjct 2868 CGACAATGAT 2859 >seq328 Length=143270 Score = 116 bits (128), Expect = 6e-20 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| |||| ||||| ||||||||||| || ||||| | || |||||||| || |||||| Sbjct 12085 GCCTCCAATTACCTGGACATCAAGCCACTTCTCGACGTCGGATGCAAGACGGTCGCCAAC 12026 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| || ||||| ||||||||||| || ||||||| Sbjct 12025 ATGATCAAGGGCAAGTCCCCTGAGGAGATCCGCAAGACATTCAACATCA 11977 >seq35 Length=365667 Score = 116 bits (128), Expect = 6e-20 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 429519 GGGTGGACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGAACCGGCAGCCG 429578 || |||| || |||||||||||| ||| |||||| | | || | ||||| |||||| Sbjct 293458 GGCTGGAAGGTTGAGCGCCACCTGATCACTGGCGACTACATCATCTTCAACCGTCAGCCG 293517 Query 429579 TCGCTCCACATGGGGTCGATGCTCAACCACA-AGGTGGTGCCCATGCCCGGTCGCACCTT 429637 ||||| |||| || ||| ||| | |||| || | | | | ||||| |||||| Sbjct 293518 TCGCTGCACAAGGAGTCCATGATGGGTCACAGAGTTCGCGTC-ATGCCGTACTCCACCTT 293576 Query 429638 CCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAA 429697 ||| ||||||||| |||| ||| |||||||||| || || || || ||||||||||| Sbjct 293577 CCGTCTCAACCTGTCCGTCACGTCGCCCTACAACGCTGATTTCGATGGTGACGAGATGAA 293636 Query 429698 CCTGCACGTGCCCCAG 429713 ||| ||||| || ||| Sbjct 293637 CCTCCACGTTCCTCAG 293652 >seq539 Length=250313 Score = 102 bits (112), Expect = 1e-15 Identities = 236/351 (67%), Gaps = 5/351 (1%) Strand=Plus/Plus Query 2175039 GCGGCGGTGCGCACGGCATCGAGCGCCGTTGCCACGCTGCCGTCGGTGCCGTTTTTAAAC 2175098 ||||||| | | |||||||| || ||| | ||||||||||||||||||| || Sbjct 134418 GCGGCGGCACCAATGGCATCGATAGCAACACCCAGGTTGCCGTCGGTGCCGTTTTTGAAA 134477 Query 2175099 CCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGTGCACCTGGCTCTCGGTGGTGCGC 2175158 ||||| || || | ||| | || |||| |||||||||| ||| |||||||||||| Sbjct 134478 CCGACGGGGAAGGACAGGCCGGAAGCCAGCTCGCGGTGCAGCTGAGACTCGGTGGTGCGG 134537 Query 2175159 GCGCCCACGGCGCCCCACGCCACGAGGTCTGCCAAATAGGGCGCCACCAAAGGGCTGAGA 2175218 ||||| | ||| ||| | | || ||| || | | ||| | | | ||| Sbjct 134538 GCGCCAATGGCACCCACGGAGATGAAGTCGGCAAGGAACTGCGGGGAGATGGTGTCGAGC 134597 Query 2175219 AACTCGACAGCCACGGGCTGGCCGACGTCGACGACCAGGTCGCGCAGCAGTCGACGCGAT 2175278 | |||| || | |||| |||| | ||| | |||||||| | || | ||||| Sbjct 134598 ATCTCGCTGGCAATGGGCATGCCG--GCCGA-GGTCAGGTCGCTGAAGAGCTGGCGCGA- 134653 Query 2175279 GTGGCG-AGGCCGGCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGCCAGGCC 2175337 | ||| ||||| | | | | | ||||| || |||||| || ||| || Sbjct 134654 GACGCGCAGGCCCTTGTTGATCTTGAAGGTGGAGTCGATATCCGGGTCGTTGATCAGACC 134713 Query 2175338 CTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCAC 2175388 |||||| ||||| || ||||||||||| || | |||||||||||||| || Sbjct 134714 CTTCCAGCCGACAGTGGTGCGCGGCTTCTCCAGGTAGGCGCGCATGACGAC 134764 >seq474 Length=656623 Score = 87.8 bits (96), Expect = 3e-11 Identities = 93/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 2233091 GTCGCCTTTCCCACCGAGACCGTCTATGGCCTCGGCGCCGACGCGGCGTCAGA-CGAGGC 2233149 |||||||| ||||| || ||||| || ||||| || || ||||| | | || ||| || Sbjct 396088 GTCGCCTTCCCCACAGAAACCGTGTACGGCCTGGGTGCGGACGCCACC-CGGAGCGATGC 396030 Query 2233150 CGTACAGCGCATCTTTGACGCCAAGGGCCGACCGTCCAACAACCCGATCATCGTGCACGT 2233209 ||| || |||||| |||||||||||| |||||| |||||||| ||||| |||||| Sbjct 396029 GGTAAAGGGCATCTACTCCGCCAAGGGCCGGCCGTCCGACAACCCGCTCATCTCGCACGT 395970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916110666060164