Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq181 165 1e-34
seq164 147 3e-29
seq1073 120 5e-21
seq328 116 6e-20
seq35 116 6e-20
seq539 102 1e-15
seq474 87.8 3e-11
>seq181
Length=205887
Score = 165 bits (182), Expect = 1e-34
Identities = 216/299 (72%), Gaps = 0/299 (0%)
Strand=Plus/Minus
Query 2019141 GGCGTGGACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGACCTGCCG 2019200
||| | ||||| || |||| ||||||| ||| ||| | | || |||||||
Sbjct 71266 GGCATCGACGTTGTTCGTAATCGCATCAAGGGCTTCGCACAGAAGAAAGTCACCCTGCCG 71207
Query 2019201 CCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAG 2019260
| |||||||||||| || |||||||||| || |||||| || | || |||| || |||
Sbjct 71206 CAGGGCCGCCACAAGCTGGTCATCCTCGACGAAGCCGACAGCATGACATCGGGCGCGCAG 71147
Query 2019261 CAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGC 2019320
||||||||||| || ||||||| ||| |||||||||||||||| ||| | ||||||
Sbjct 71146 CAGGCCCTCCGCCGAACGATGGAAATCTACTCCAACACGACGCGGTTCGCGTTTGCCTGC 71087
Query 2019321 AACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCG 2019380
||| |||| | | ||||||| | || ||| || ||||||||| |||| | ||
Sbjct 71086 AACCAGTCGAACAAGATCATCGAGCCGCTGCAGTCGCGCTGCGCCATCCTGCGGTACGCC 71027
Query 2019381 CGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGT 2019439
| |||||||||| ||| | | | ||| |||| |||| || || || || |||||
Sbjct 71026 AGACTCACCGACGAGCAGGTAGTCAAGCGGCTGCTGCAGATCATTGAGGCGGAGAAGGT 70968
>seq164
Length=162670
Score = 147 bits (162), Expect = 3e-29
Identities = 188/259 (73%), Gaps = 0/259 (0%)
Strand=Plus/Minus
Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600
|||||||||||||| || |||| ||| ||||| || ||||| || || | ||||||||
Sbjct 45252 TGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGGACGACACCGTTGGAG 45193
Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660
|||||||||||||| | ||||| ||| | || || | || || | |||
Sbjct 45192 GTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAACGAATGCGATGGACGTTGAGACCG 45133
Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720
||||| || ||| |||||| || | |||||| | || || || ||||||||||| |||
Sbjct 45132 ATGCCTCCAGCCATCTTGGAAATCATGGCGCACGTCTTGAGGGTGTCGTAGATGCCTTCG 45073
Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780
|| ||||| ||||||| || | || |||||||| || ||| | | | ||||||
Sbjct 45072 ATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAAGACAGTTGGGCCTGAGGGGTGCCG 45013
Query 2073781 GCATTGAAGAGCGTGGGCG 2073799
|| ||||| || |||||||
Sbjct 45012 GCGTTGAACAGAGTGGGCG 44994
Score = 109 bits (120), Expect = 9e-18
Identities = 295/455 (65%), Gaps = 12/455 (3%)
Strand=Plus/Minus
Query 2071564 GGCGACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGT 2071621
|||| ||| ||| || || || ||||| ||||||| | || |||| || ||||
Sbjct 45702 GGCGCCGAGTACTCGATGATTTCAGTGCAAAGGTTGGAG--CTGCGGATGGTACCGAGGT 45645
Query 2071622 TCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCT 2071681
||| ||||||||| | ||||| |||||||||||| ||||||| |||| |||||||
Sbjct 45644 TCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGTCT 45585
Query 2071682 CGATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGC 2071741
| |||||||| | |||||| |||| | || |||| || | || |||
Sbjct 45584 CCGTCTGCGCCTCAAGGATGGCGTACCACA----GCTTCTGGGCCTTGATGGTCTTGCGA 45529
Query 2071742 GGC----CCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCG 2071797
| ||| | | || ||||| | |||||| || |||
Sbjct 45528 CCCTTACCCTCGCGCTCGTACTTCTCGTACAACGCCTCAAACTCCTCGCCGTAACAGTCG 45469
Query 2071798 TGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGG 2071857
||||||| |||| || || | ||| | |||||| ||| || | || |
Sbjct 45468 GCGAGGCCGGAGCACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTC 45409
Query 2071858 CGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCC 2071917
||| || || || |||| ||| || || |||||||| || ||| |||||||
Sbjct 45408 TTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCC 45349
Query 2071918 TTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGG 2071977
|||||||||||||| || ||||| | |||| || ||||||||||| ||||| |||
Sbjct 45348 TTGCCGTGGTTCTTGCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGG 45289
Query 2071978 TAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012
||| ||| ||||| || |||||| |||||
Sbjct 45288 TAGATGGCGAAGGCACCAGGTCGCTTGTTACCGCC 45254
>seq1073
Length=8604
Score = 120 bits (132), Expect = 5e-21
Identities = 145/194 (75%), Gaps = 9/194 (5%)
Strand=Plus/Minus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400
|||||||||||| ||| | ||| ||| ||| ||||| |||||||| || ||||||
Sbjct 2785 CCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGCCAGGCATGAGACCACGCTTC 2726
Query 794401 TTGAGCCAAAAGATGG-CACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
|||||||||||||||| | || || || ||||| ||||||||||| || || || ||
Sbjct 2725 TTGAGCCAAAAGATGGACGCA-AAGGCACCGGAGAAGAAGATGCCCTCAACAGCAGCGAA 2667
Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT--TTGTTGATCCACTTCATCGCC 794517
| |||| || |||| || ||||| || | ||| | |||||||||||| | |||
Sbjct 2666 GGCGACAAGACGCTGAGCGAAAGT-----GGACTTCTGGTCGTTGATCCACTTGAGGGCC 2612
Query 794518 CACTCTGCCTTTTT 794531
|| || ||||| ||
Sbjct 2611 CAGTCGGCCTTCTT 2598
Score = 113 bits (124), Expect = 7e-19
Identities = 175/250 (70%), Gaps = 0/250 (0%)
Strand=Plus/Minus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
||||||| ||||| || ||| | || ||| ||| || |||||||||||||| | |
Sbjct 3108 TGACGCCAGCCTTCTGGTAATCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAA 3049
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
| ||||| |||||| | || || ||| | | |||| ||| || ||||
Sbjct 3048 GGGAGATGTTCTCCATAAAGTCAAAGGGATTGCTTGACTTGTAGACCTTTTCATTGCCGA 2989
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
| | | ||||| |||||||| || |||||||||||||| ||||||| || ||||
Sbjct 2988 GGGTAACCAGCAGACGGTCGGCCACAAATTCAATGTACTGCTTCATGAGGTTGGAATTCA 2929
Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130
| |||| ||| | |||||| | |||| ||| ||||| | ||| |||| |||||| |
Sbjct 2928 TCCCGAGGAGACCGCAGGGCAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGACGGCGT 2869
Query 794131 CGATGATGAT 794140
||| |||||
Sbjct 2868 CGACAATGAT 2859
>seq328
Length=143270
Score = 116 bits (128), Expect = 6e-20
Identities = 91/109 (83%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
||| |||| ||||| ||||||||||| || ||||| | || |||||||| || ||||||
Sbjct 12085 GCCTCCAATTACCTGGACATCAAGCCACTTCTCGACGTCGGATGCAAGACGGTCGCCAAC 12026
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755
| |||||||||||||| || ||||| ||||||||||| || |||||||
Sbjct 12025 ATGATCAAGGGCAAGTCCCCTGAGGAGATCCGCAAGACATTCAACATCA 11977
>seq35
Length=365667
Score = 116 bits (128), Expect = 6e-20
Identities = 145/196 (74%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 429519 GGGTGGACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGAACCGGCAGCCG 429578
|| |||| || |||||||||||| ||| |||||| | | || | ||||| ||||||
Sbjct 293458 GGCTGGAAGGTTGAGCGCCACCTGATCACTGGCGACTACATCATCTTCAACCGTCAGCCG 293517
Query 429579 TCGCTCCACATGGGGTCGATGCTCAACCACA-AGGTGGTGCCCATGCCCGGTCGCACCTT 429637
||||| |||| || ||| ||| | |||| || | | | | ||||| ||||||
Sbjct 293518 TCGCTGCACAAGGAGTCCATGATGGGTCACAGAGTTCGCGTC-ATGCCGTACTCCACCTT 293576
Query 429638 CCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAA 429697
||| ||||||||| |||| ||| |||||||||| || || || || |||||||||||
Sbjct 293577 CCGTCTCAACCTGTCCGTCACGTCGCCCTACAACGCTGATTTCGATGGTGACGAGATGAA 293636
Query 429698 CCTGCACGTGCCCCAG 429713
||| ||||| || |||
Sbjct 293637 CCTCCACGTTCCTCAG 293652
>seq539
Length=250313
Score = 102 bits (112), Expect = 1e-15
Identities = 236/351 (67%), Gaps = 5/351 (1%)
Strand=Plus/Plus
Query 2175039 GCGGCGGTGCGCACGGCATCGAGCGCCGTTGCCACGCTGCCGTCGGTGCCGTTTTTAAAC 2175098
||||||| | | |||||||| || ||| | ||||||||||||||||||| ||
Sbjct 134418 GCGGCGGCACCAATGGCATCGATAGCAACACCCAGGTTGCCGTCGGTGCCGTTTTTGAAA 134477
Query 2175099 CCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGTGCACCTGGCTCTCGGTGGTGCGC 2175158
||||| || || | ||| | || |||| |||||||||| ||| ||||||||||||
Sbjct 134478 CCGACGGGGAAGGACAGGCCGGAAGCCAGCTCGCGGTGCAGCTGAGACTCGGTGGTGCGG 134537
Query 2175159 GCGCCCACGGCGCCCCACGCCACGAGGTCTGCCAAATAGGGCGCCACCAAAGGGCTGAGA 2175218
||||| | ||| ||| | | || ||| || | | ||| | | | |||
Sbjct 134538 GCGCCAATGGCACCCACGGAGATGAAGTCGGCAAGGAACTGCGGGGAGATGGTGTCGAGC 134597
Query 2175219 AACTCGACAGCCACGGGCTGGCCGACGTCGACGACCAGGTCGCGCAGCAGTCGACGCGAT 2175278
| |||| || | |||| |||| | ||| | |||||||| | || | |||||
Sbjct 134598 ATCTCGCTGGCAATGGGCATGCCG--GCCGA-GGTCAGGTCGCTGAAGAGCTGGCGCGA- 134653
Query 2175279 GTGGCG-AGGCCGGCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGCCAGGCC 2175337
| ||| ||||| | | | | | ||||| || |||||| || ||| ||
Sbjct 134654 GACGCGCAGGCCCTTGTTGATCTTGAAGGTGGAGTCGATATCCGGGTCGTTGATCAGACC 134713
Query 2175338 CTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCAC 2175388
|||||| ||||| || ||||||||||| || | |||||||||||||| ||
Sbjct 134714 CTTCCAGCCGACAGTGGTGCGCGGCTTCTCCAGGTAGGCGCGCATGACGAC 134764
>seq474
Length=656623
Score = 87.8 bits (96), Expect = 3e-11
Identities = 93/120 (78%), Gaps = 2/120 (2%)
Strand=Plus/Minus
Query 2233091 GTCGCCTTTCCCACCGAGACCGTCTATGGCCTCGGCGCCGACGCGGCGTCAGA-CGAGGC 2233149
|||||||| ||||| || ||||| || ||||| || || ||||| | | || ||| ||
Sbjct 396088 GTCGCCTTCCCCACAGAAACCGTGTACGGCCTGGGTGCGGACGCCACC-CGGAGCGATGC 396030
Query 2233150 CGTACAGCGCATCTTTGACGCCAAGGGCCGACCGTCCAACAACCCGATCATCGTGCACGT 2233209
||| || |||||| |||||||||||| |||||| |||||||| ||||| ||||||
Sbjct 396029 GGTAAAGGGCATCTACTCCGCCAAGGGCCGGCCGTCCGACAACCCGCTCATCTCGCACGT 395970
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916110666060164
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |