Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq245 91.5 1e-13
>seq245
Length=397273
Score = 91.5 bits (100), Expect = 1e-13
Identities = 163/236 (69%), Gaps = 4/236 (2%)
Strand=Plus/Plus
Query 137182 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 137241
|| || || || | ||| | || || || | || || || || || ||||||||||||
Sbjct 356211 TGACCACCACGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCG 356270
Query 137242 CTCATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGG 137299
|| | | ||| || || | || || ||||| |||| ||||||||||| || |
Sbjct 356271 G--ATAGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAG 356328
Query 137300 GAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTT 137359
|||| ||||| || ||||| || || || | | || | ||||||| | |
Sbjct 356329 GAGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCTGAAGACT 356388
Query 137360 CTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415
| ||||| | ||| | ||||||||||||||| || || ||||| ||||||||| ||
Sbjct 356389 CGACTTCCAAAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAAATTTGCATACCT 356444
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 488536207723200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |