Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq245 91.5 1e-13 >seq245 Length=397273 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 137182 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 137241 || || || || | ||| | || || || | || || || || || |||||||||||| Sbjct 356211 TGACCACCACGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCG 356270 Query 137242 CTCATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGG 137299 || | | ||| || || | || || ||||| |||| ||||||||||| || | Sbjct 356271 G--ATAGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAG 356328 Query 137300 GAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTT 137359 |||| ||||| || ||||| || || || | | || | ||||||| | | Sbjct 356329 GAGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCTGAAGACT 356388 Query 137360 CTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 | ||||| | ||| | ||||||||||||||| || || ||||| ||||||||| || Sbjct 356389 CGACTTCCAAAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAAATTTGCATACCT 356444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488536207723200