Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq164 325 4e-84 seq63 129 6e-25 seq245 116 4e-21 seq663 104 2e-17 >seq164 Length=162670 Score = 325 bits (360), Expect = 4e-84 Identities = 1036/1578 (66%), Gaps = 59/1578 (4%) Strand=Plus/Minus Query 148232 CTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCG 148291 ||||| ||||| | || || | |||| || ||||| |||||||| ||||| ||||| Sbjct 46333 CTCGACAAGGTCCTTGAGAAGCCAGGGATTGACGACCTGGAACTCGCCAGCGAGAACGCG 46274 Query 148292 CCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGC 148351 ||| | || | |||| || | ||||| || ||||||||||||||| |||||||| Sbjct 46273 GCGCTGGTAGATGTTGGAGGTGTAAGGTTCGAAGCACTCGTTGTTGCCCAGAATCTGCGA 46214 Query 148352 GGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTAT 148411 || |||| ||||||||| || || ||||| |||||| | ||| | | || || Sbjct 46213 AGTGCTTGCAGTGGGCATGGGGGCAACGAGCAGACTGTTGCGGACGCCGTGCTGCTTGAT 46154 Query 148412 TTTGCGCTT-CAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGT 148470 | || ||| || || ||||||||||||| || || | |||| ||||||||||| Sbjct 46153 CT-GCTCTTTCAAAGAGTCCCAGTCCCAGAGGTCAGAGGGCTTGACGTCCCACATGTCGT 46095 Query 148471 ACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCG 148530 |||| ||||| || | | | ||| ||| ||||||||| ||| | || | || Sbjct 46094 ACTGGAGAATCCCCTTGGAAACAGGGGAGCCTTCGTACGAGGAGTAGGTGCCTTCTTCCT 46035 Query 148531 CCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGT 148590 ||||| | |||| | ||| ||| ||| ||| || |||||| || | | ||| Sbjct 46034 GCGCCAACTGGCAGGACATGGTGAGGGCGGCGTGGTAGATGGTCTCGAAGATCTTCTTGT 45975 Query 148591 TGAG-----CAGC-GCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGT 148644 |||| ||| | || ||| ||| | ||||| ||||| | ||||| | Sbjct 45974 TGAGGTCTCGAGCTTCAGCAGAC------TCGAAGGGCATGCGCAGGGCAAGGAACGCAT 45921 Query 148645 CGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGC 148704 | ||||||||||| ||||| | || ||||| || || |||||| | || || | Sbjct 45920 CAGCAAGGCCCTGGACGCCGAGACCGATGGGGCGATGGCGCATGTTGCTGTTACGGGC-C 45862 Query 148705 TCTCGAGC-GGATAGTGGTTGCGGTCGATGATCTTG-TCAAGATTGCGCACCACCACCTT 148762 || || | || ||||||||| ||| |||||| || ||||| ||||| || || |||| Sbjct 45861 TCCTGAACAGGGTAGTGGTTGACGTCAATGATCCTGTTCAAG-TTGCGGACGACAACCTG 45803 Query 148763 TGTAA--TTCTGC----GCAGCAATTCAAA---ATCGTACTTGTCATCTACGATGCATCG 148813 || | | ||| | | || ||| | | | |||| || |||| | | | Sbjct 45802 GGTGACCTCGTGCAACTTCTGGAAGTCATAGGTGCCTTCGTTGTAGTCAACGAAG-GTGG 45744 Query 148814 GTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTAC 148873 | || ||| | ||| || || ||||| ||||| |||||| || || |||||| | Sbjct 45743 G--CAGGGCCAGAGAAGCCAGGTTGCAGACGGCAACCTCATCAGGCGCCGAGTACTCGAT 45686 Query 148874 GATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCT 148933 ||| || | ||| || ||| || ||| || | |||||| || |||||||||| Sbjct 45685 GATTTCAGTGCAAAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCG 45626 Query 148934 GTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT 148993 |||| |||||||||||||||||| | || ||| || ||| ||||| || | || Sbjct 45625 GTTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGAT 45566 Query 148994 ---GAACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCT---CCT---G 149044 | ||| ||| | ||| || |||| || || | |||||||| ||| | Sbjct 45565 GGCGTACC---ACAGCTTCTGGGC-----CTTGATGGTC-TTGCGACCCTTACCCTCGCG 45515 Query 149045 CTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCA 149104 |||||| |||| | ||| ||| |||||||||| || ||| |||| |||| ||| Sbjct 45514 CTCGTACTTCTCGTACAACGCCTCAAACTCCTCGCCGTAACAGTCGGCGAGGCCGGAGCA 45455 Query 149105 CTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATC 149164 || || || |||||||| | ||| | |||| | | || | |||||| || ||||| Sbjct 45454 CTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGATC 45395 Query 149165 GGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCG 149224 || | ||| || ||| | || ||||| || | || || ||| ||| Sbjct 45394 AGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTCTT 45335 Query 149225 GCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGC 149284 ||| || | ||| | ||| | || |||||||| ||||||| ||| | |||| || Sbjct 45334 GCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGC 45275 Query 149285 GCCCTTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAAC 149341 || |||||| ||||| |||||||| | ||| | ||||||| || || || | Sbjct 45274 ACCAGGTCGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAG 45215 Query 149342 CATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCG 149401 |||||| | | || ||| || ||||| || ||| ||| | || Sbjct 45214 CATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAACG 45155 Query 149402 CACTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCA-GTCG 149459 | || ||||||| |||||||| || ||| | ||| || || ||||| ||| Sbjct 45154 AATGCGATGGACGTTGAGACCGATGCCTCCAGCCAT-CTTGGAAATCATGGCGCACGTC- 45097 Query 149460 CCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAG 149519 ||| || ||||||||| |||||| ||| |||||| | || |||||||| Sbjct 45096 TTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAA 45037 Query 149520 CACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGT-AAAATA 149578 ||| ||| | | | |||||||| ||||| ||||| ||| || || || | Sbjct 45036 GACAGTTGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAACAGC 44977 Query 149579 TTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCC 149638 || || | ||||| | ||||| ||||| ||||| || | || || || ||||| Sbjct 44976 TTGCTCG-ACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCAAATGCC 44918 Query 149639 TATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAG 149698 | ||||| ||||| | ||| || ||||| | ||| || | ||| | || ||||| Sbjct 44917 AACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGATCTTGAG 44858 Query 149699 CAAGTA-GCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGT 149757 | ||| | | | | | || |||||| |||| ||||| | ||||| ||||| ||| ||| Sbjct 44857 GAGGTACGACCTCTCCAAG-GTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGT 44799 Query 149758 GGTCAATGGCGGCGTCGA 149775 | |||| || | ||||| Sbjct 44798 AGACAATCGCCGAGTCGA 44781 >seq63 Length=145700 Score = 129 bits (142), Expect = 6e-25 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| || ||| |||||| ||||||||||| Sbjct 39570 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTGCC 39511 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | |||||||||||||| |||||||| |||||||| |||||| ||| Sbjct 39510 GGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 39451 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | |||||| || | ||||| || || || || || || Sbjct 39450 GACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGT 39391 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 39390 CTTGACGAAGATCTGCATG 39372 >seq245 Length=397273 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||||||| | |||| ||| | ||||| || || || || Sbjct 356472 GTAGACTCCTTCTGAATGTTGTAATCGGAGAGCGTGCGACCA-TCCTCAAGTTGTTTTCC 356530 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| ||||||||||| ||||| || || |||||||| ||||| ||| Sbjct 356531 GGCGAAGATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTT 356590 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | || || | | ||| || || | || | ||| |||||||||||||| Sbjct 356591 GACGTTGTCGATGGTATCCGAAGACTCGACCTCCAAAGTAATGGTCTTGCCGGTCAGAGT 356650 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 356651 CTTGACGAAAATCTGCAT 356668 Score = 109 bits (120), Expect = 5e-19 Identities = 130/174 (75%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || || || || ||||| |||| | ||| ||| | ||||| ||||||||||| Sbjct 356700 GTGGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCA-TCCTCAAGCTGCTTGCC 356758 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| || |||||||||||||||||||| || |||||||| ||||| ||| Sbjct 356759 AGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTGGACTT 356818 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 || | || | || |||| || ||| || |||| |||| ||| || ||||| Sbjct 356819 GACATTGTCGATGGTATCGGAGGACTCAACCTCGAGAGTGATGGTCTTTCCGGT 356872 >seq663 Length=189090 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||| |||||||| || ||| | || | |||||||||||||| |||||||| ||||| Sbjct 17567 GTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTT 17508 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | |||||| | || ||| || |||| ||| | Sbjct 17507 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCAACCTCGAGGGTAAT 17448 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAA 133651 ||| || || ||||| || || ||||| Sbjct 17447 GGTCTTACCCGTCAGGGTCTTAACGAA 17421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483413089438240