Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq63 102 5e-17 seq245 87.8 1e-12 >seq63 Length=145700 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | || || | ||||| || || ||| ||| || || |||||||| |||| Sbjct 39601 CACCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 39542 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || ||||| |||| || | || || ||||| || ||||| |||||||| || | | Sbjct 39541 ACAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGG 39482 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || || ||||| || || || | ||| ||| | ||||||| || ||| Sbjct 39481 GGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CATTGTCGATGGTGTCGGAAGACTCC 39423 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || ||||| || | || || || ||||||||||| Sbjct 39422 ACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 39373 >seq245 Length=397273 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || | ||| ||| || || ||||||||||||||||| ||||| | || || Sbjct 356459 CACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGTAATCGGAGAGCGTGCGACCATCCTC 356518 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | |||||||||||| || || | ||||||||| || | || | ||| || ||||| Sbjct 356519 AAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTG 356578 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 ||| ||| | | || | ||| | ||| || || || || || | || || || | Sbjct 356579 AATCTTC-GACTTGACGTTGTCGATGGTATCCGAAGACTCGACCTCCAAAGTAATGGTCT 356637 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | || || || || ||||||||| Sbjct 356638 TGCCGGTCAGAGTCTTGACGAAAATCTGCATA 356669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328698888241920