Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq164 201 1e-46 seq1073 91.5 1e-13 >seq164 Length=162670 Score = 201 bits (222), Expect = 1e-46 Identities = 992/1543 (64%), Gaps = 47/1543 (3%) Strand=Plus/Minus Query 146891 GATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAG 146950 ||||||| || || |||||||| || || || || | | || | ||| ||| ||| Sbjct 46307 GATTGACGACCTGGAACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTGGAGGTGTAAG 46248 Query 146951 GCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCA 147010 | || || |||| || ||||| | || || | ||| |||| || |||||| || | Sbjct 46247 GTTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGCATGGGGGCAA 46188 Query 147011 CCAACAATGAATTTCGCAGAC--CGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTC 147068 | | || || | | || ||| ||| | ||| | || ||||||| | |||||| Sbjct 46187 CGAGCA--GACTGTTGCGGACGCCGTGCTGCTTGATCTGCTCTTTCAAAGAGTCCCAGTC 46130 Query 147069 CCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCA-CTCCTCG---ACTGG 147124 ||| | |||||| | |||| |||||||||||||||||| | | ||| | || | Sbjct 46129 CCAGAGGTCAGAGGGCTTGACGTCCCACATGTCGTACTGGAGAATCCCCTTGGAAACAG- 46071 Query 147125 CGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAG--CTTGC 147182 |||| ||| || ||| | |||| | || || ||||||||| | ||| | || Sbjct 46070 -GGGA--GCCTTCGTACGAGGAGTAGGTGCCTTCTTCCTGCGCCAACTGGCAGGACATG- 46015 Query 147183 CTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTC 147242 ||| || | | ||| ||||| ||| ||| | ||||| ||| | ||||| | Sbjct 46014 -GTGAGGGCGGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCTCGAGCTTCAGC 45956 Query 147243 GCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCC 147302 |||| | ||||| ||||| | || ||||| || | ||||||| |||| || Sbjct 45955 AGACTCGAAGGGCATGCGCAGGGCAAGGAACGCATCAGCAAGGCCCTGGACGCCGAGACC 45896 Query 147303 GATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAGTGGTTGCGA 147360 ||| || ||||| |||||| | | || || || | || ||||||||| Sbjct 45895 GATGGGGCGATGGCGCATGTTGCT--GTTACGGGCCTCCTGAACAGGGTAGTGGTTGACG 45838 Query 147361 TCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAA 147420 ||||| ||| |||| | ||| || || ||||| | || | | | |||| ||| Sbjct 45837 TCAATGATCCTGTTCAAGTTGCGGACGACAACCTGGGTGACCTCGTGCAACTTCTGGAAG 45778 Query 147421 TCATAAGTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAG 147480 ||||| || || || | | ||| | | || ||| | ||| ||||| |||||| Sbjct 45777 TCATAGGTGCCTTCGTTGTAGTCAACGAAGGTGGGCAGGGCCAGAGAAGCCAGGTTGCAG 45718 Query 147481 ACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTT 147539 ||||| ||| || |||| || ||||| | |||||| | ||| |||||| || Sbjct 45717 ACGGCAACCTCATCAGGCGCCG-AGTACTCGATGATTTCAGTGCAAAGGTTGGAGCTGCG 45659 Query 147540 TATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTA 147599 ||| || | || | ||| ||||| || || ||| ||||| ||| | |||||| | Sbjct 45658 GATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGCATGAA 45599 Query 147600 CGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTA-TGCAGGTCCTGCGCTCGCA 147658 || ||| ||||| |||| |||| ||| | || ||| | ||| || | Sbjct 45598 GGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGAT-GGCGTACCACAGCTTCTGGGCCTTGA 45540 Query 147659 CCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGC 147718 || ||| |||||| |||||| |||||||||| ||||||||| |||| Sbjct 45539 TGGTCTTGCGACCCTTACCCTCGCGCTCGTACTTCTCGTACAACGCCTCAAACTCCTCGC 45480 Query 147719 CGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCG 147778 |||| || ||||| ||||||| |||| | |||||||| || | ||| ||| | Sbjct 45479 CGTAACAGTCGGCGAGGCCGGAGCACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCT 45420 Query 147779 CGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTT 147838 | || | ||| || ||||| || | ||| || ||| | ||||||||| || Sbjct 45419 TCTCGACTCTCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCAC 45360 Query 147839 TGCAATCCTCGGCGCCCATGTTGCGTTTCAA-AT-TAAGCACGCTATAGATGTCGGCGTG 147896 | ||||| | || || | | | || || | | || | | ||| |||||||| Sbjct 45359 GGACCTCCTCCTTG-CCGTGGTTCTTGCGAAGATCGAGGAACTCGA-AGACATCGGCGTG 45302 Query 147897 CCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATG 147953 |||||| |||| ||||| ||| | ||||| ||| || ||||| |||||||||| Sbjct 45301 CCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTACCGCCTTGGTCGACATA 45242 Query 147954 GCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGT 148013 ||| | ||||||| || || |||| ||| || | | ||| | | || |||||||| Sbjct 45241 GCGAGCGGTGTTGTTGAAGACACGCAGCATAGGGACGACACCGTTGGAGGTTCCGTTGGT 45182 Query 148014 GGAATTGATCTTGCTGCCGCGGGCTCGCACTTCG-TGCACGTTAACGCCAATGCCGCC-G 148071 | ||| | | ||| || || | | || || ||||| | || ||||| || | Sbjct 45181 GCCCGCGATGTAGGAGCCAGTGGAACG-AATGCGATGGACGTTGAGACCGATGCCTCCAG 45123 Query 148072 CCGTACTTTGATATGGCAGCGCAATCGCC--CAATGTCGTGTAGATGCCGTCGATGCTGT 148129 || | ||| || || ||||| || | | || ||||||||| |||||| || Sbjct 45122 CCAT-CTTGGAAATCATGGCGCA--CGTCTTGAGGGTGTCGTAGATGCCTTCGATGGAGT 45066 Query 148130 CGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCG-AG 148188 | | || | | | | || |||||| ||| ||| || | | | | ||| || | Sbjct 45065 CCTCCTTCATATCGACGAGGAAGCACGAAGACAGTTG-GGCCTGAGGGGTGCCGGCGTTG 45007 Query 148189 AAAAGGGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATACGTCTCAA 148246 || || ||||| || || || |||| || | || ||||| | |||||||| | Sbjct 45006 AACAGAGTGGGCGAGGCATGGGTGAACAGCTTGCTCGA--CATCAAGTTGTACGTCTCGA 44949 Query 148247 TAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTG 148306 || || || | || ||| || |||||| | ||||| ||||| | |||||| || | Sbjct 44948 TAACGCGCTCAACGTTGTCACCCCAAATGCCAACAGCGACACGCATAATCATGTGTTGCG 44889 Query 148307 GTCGTTCGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAA 148365 | | ||||||| |||| | ||||||||| || || | || | ||| ||| | Sbjct 44888 GCCTCTCGGCAATCTTG-CCATCGATCTTGAGGAGGTACGACCTCTCCAAGGTCTTGAAG 44830 Query 148366 CCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 || ||||| | ||| | || || | ||||| | || |||| Sbjct 44829 CCGAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATCGCCG 44787 >seq1073 Length=8604 Score = 91.5 bits (100), Expect = 1e-13 Identities = 328/507 (65%), Gaps = 7/507 (1%) Strand=Plus/Plus Query 46758 GTGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCC 46817 || || ||| ||||||| |||||| | |||||| | ||||||||| | | ||| || Sbjct 2583 GTTCCCTGCATTCGCAAGAAGGCCGACTGGGCCCTCAAGTGGATCAACGACCAGAAGTCC 2642 Query 46818 ACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGT 46877 || | || |||| | || || ||||| || || ||| | || || || || Sbjct 2643 ACTTTCGCTCAGCGTCTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCC 2702 Query 46878 TTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAAC 46937 ||||| |||| |||| | || | || | ||||| |||||||| ||| || Sbjct 2703 TTTGCGTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTGACCTTCTCCAAT 2762 Query 46938 GAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACG 46997 || | ||||| |||||||||||||| ||||| || ||||| || || ||| | Sbjct 2763 GAACTCATCTCTCGCGACGAAGGACTGCACACCGATTTTGCCTGCCTGCTCTAC---TCC 2819 Query 46998 CGCGTGAATGAGAAATTAAACTCGGACACGATCCTGAGCATGTTTAGGGAGGCGGTGAGC 47057 | | |||| | | | | | |||| | ||| || || || || | Sbjct 2820 CACCTGAAGCACCGCCCCAGCAAGCAGGTCATCCGGGACATCATTGTCGACGCCGTCAAG 2879 Query 47058 ATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAG 47117 || || ||||||| | || | ||| |||||| || | || || ||||| | || Sbjct 2880 ATTGAGCAGGAGTTCCTCACCGAGGCTCTGCCCTGCGGTCTCCTCGGGATGAATTC-CAA 2938 Query 47118 TCT-ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACC 47176 || ||| | || ||||| |||||||| || |||||| |||| ||||| ||| Sbjct 2939 CCTCATGAAGCAGTACATTGAATTTGTGGCCGACCGTCTGCTGGTTACCCTCGG-CAATG 2997 Query 47177 GAAATAT-TTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCA 47235 ||| | | || | | ||||| ||||| |||||| | ||||| || || | |||| Sbjct 2998 AAAAGGTCTACAAGTCAAGCAATCCCTTTGACTTTATGGAGAACATCTCCCTTGGTGGCA 3057 Query 47236 AAACCAATTTTTTCGAGAAACGAGTCG 47262 | ||||| || || ||||| || |||| Sbjct 3058 AGACCAACTTCTTTGAGAAGCGTGTCG 3084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476603598051360