Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq164 201 1e-46
seq1073 91.5 1e-13
>seq164
Length=162670
Score = 201 bits (222), Expect = 1e-46
Identities = 992/1543 (64%), Gaps = 47/1543 (3%)
Strand=Plus/Minus
Query 146891 GATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAG 146950
||||||| || || |||||||| || || || || | | || | ||| ||| |||
Sbjct 46307 GATTGACGACCTGGAACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTGGAGGTGTAAG 46248
Query 146951 GCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCA 147010
| || || |||| || ||||| | || || | ||| |||| || |||||| || |
Sbjct 46247 GTTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGCATGGGGGCAA 46188
Query 147011 CCAACAATGAATTTCGCAGAC--CGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTC 147068
| | || || | | || ||| ||| | ||| | || ||||||| | ||||||
Sbjct 46187 CGAGCA--GACTGTTGCGGACGCCGTGCTGCTTGATCTGCTCTTTCAAAGAGTCCCAGTC 46130
Query 147069 CCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCA-CTCCTCG---ACTGG 147124
||| | |||||| | |||| |||||||||||||||||| | | ||| | || |
Sbjct 46129 CCAGAGGTCAGAGGGCTTGACGTCCCACATGTCGTACTGGAGAATCCCCTTGGAAACAG- 46071
Query 147125 CGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAG--CTTGC 147182
|||| ||| || ||| | |||| | || || ||||||||| | ||| | ||
Sbjct 46070 -GGGA--GCCTTCGTACGAGGAGTAGGTGCCTTCTTCCTGCGCCAACTGGCAGGACATG- 46015
Query 147183 CTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTC 147242
||| || | | ||| ||||| ||| ||| | ||||| ||| | ||||| |
Sbjct 46014 -GTGAGGGCGGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCTCGAGCTTCAGC 45956
Query 147243 GCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCC 147302
|||| | ||||| ||||| | || ||||| || | ||||||| |||| ||
Sbjct 45955 AGACTCGAAGGGCATGCGCAGGGCAAGGAACGCATCAGCAAGGCCCTGGACGCCGAGACC 45896
Query 147303 GATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAGTGGTTGCGA 147360
||| || ||||| |||||| | | || || || | || |||||||||
Sbjct 45895 GATGGGGCGATGGCGCATGTTGCT--GTTACGGGCCTCCTGAACAGGGTAGTGGTTGACG 45838
Query 147361 TCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAA 147420
||||| ||| |||| | ||| || || ||||| | || | | | |||| |||
Sbjct 45837 TCAATGATCCTGTTCAAGTTGCGGACGACAACCTGGGTGACCTCGTGCAACTTCTGGAAG 45778
Query 147421 TCATAAGTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAG 147480
||||| || || || | | ||| | | || ||| | ||| ||||| ||||||
Sbjct 45777 TCATAGGTGCCTTCGTTGTAGTCAACGAAGGTGGGCAGGGCCAGAGAAGCCAGGTTGCAG 45718
Query 147481 ACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTT 147539
||||| ||| || |||| || ||||| | |||||| | ||| |||||| ||
Sbjct 45717 ACGGCAACCTCATCAGGCGCCG-AGTACTCGATGATTTCAGTGCAAAGGTTGGAGCTGCG 45659
Query 147540 TATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTA 147599
||| || | || | ||| ||||| || || ||| ||||| ||| | |||||| |
Sbjct 45658 GATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGCATGAA 45599
Query 147600 CGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTA-TGCAGGTCCTGCGCTCGCA 147658
|| ||| ||||| |||| |||| ||| | || ||| | ||| || |
Sbjct 45598 GGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGAT-GGCGTACCACAGCTTCTGGGCCTTGA 45540
Query 147659 CCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGC 147718
|| ||| |||||| |||||| |||||||||| ||||||||| ||||
Sbjct 45539 TGGTCTTGCGACCCTTACCCTCGCGCTCGTACTTCTCGTACAACGCCTCAAACTCCTCGC 45480
Query 147719 CGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCG 147778
|||| || ||||| ||||||| |||| | |||||||| || | ||| ||| |
Sbjct 45479 CGTAACAGTCGGCGAGGCCGGAGCACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCT 45420
Query 147779 CGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTT 147838
| || | ||| || ||||| || | ||| || ||| | ||||||||| ||
Sbjct 45419 TCTCGACTCTCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCAC 45360
Query 147839 TGCAATCCTCGGCGCCCATGTTGCGTTTCAA-AT-TAAGCACGCTATAGATGTCGGCGTG 147896
| ||||| | || || | | | || || | | || | | ||| ||||||||
Sbjct 45359 GGACCTCCTCCTTG-CCGTGGTTCTTGCGAAGATCGAGGAACTCGA-AGACATCGGCGTG 45302
Query 147897 CCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATG 147953
|||||| |||| ||||| ||| | ||||| ||| || ||||| ||||||||||
Sbjct 45301 CCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTACCGCCTTGGTCGACATA 45242
Query 147954 GCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGT 148013
||| | ||||||| || || |||| ||| || | | ||| | | || ||||||||
Sbjct 45241 GCGAGCGGTGTTGTTGAAGACACGCAGCATAGGGACGACACCGTTGGAGGTTCCGTTGGT 45182
Query 148014 GGAATTGATCTTGCTGCCGCGGGCTCGCACTTCG-TGCACGTTAACGCCAATGCCGCC-G 148071
| ||| | | ||| || || | | || || ||||| | || ||||| || |
Sbjct 45181 GCCCGCGATGTAGGAGCCAGTGGAACG-AATGCGATGGACGTTGAGACCGATGCCTCCAG 45123
Query 148072 CCGTACTTTGATATGGCAGCGCAATCGCC--CAATGTCGTGTAGATGCCGTCGATGCTGT 148129
|| | ||| || || ||||| || | | || ||||||||| |||||| ||
Sbjct 45122 CCAT-CTTGGAAATCATGGCGCA--CGTCTTGAGGGTGTCGTAGATGCCTTCGATGGAGT 45066
Query 148130 CGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCG-AG 148188
| | || | | | | || |||||| ||| ||| || | | | | ||| || |
Sbjct 45065 CCTCCTTCATATCGACGAGGAAGCACGAAGACAGTTG-GGCCTGAGGGGTGCCGGCGTTG 45007
Query 148189 AAAAGGGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATACGTCTCAA 148246
|| || ||||| || || || |||| || | || ||||| | |||||||| |
Sbjct 45006 AACAGAGTGGGCGAGGCATGGGTGAACAGCTTGCTCGA--CATCAAGTTGTACGTCTCGA 44949
Query 148247 TAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTG 148306
|| || || | || ||| || |||||| | ||||| ||||| | |||||| || |
Sbjct 44948 TAACGCGCTCAACGTTGTCACCCCAAATGCCAACAGCGACACGCATAATCATGTGTTGCG 44889
Query 148307 GTCGTTCGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAA 148365
| | ||||||| |||| | ||||||||| || || | || | ||| ||| |
Sbjct 44888 GCCTCTCGGCAATCTTG-CCATCGATCTTGAGGAGGTACGACCTCTCCAAGGTCTTGAAG 44830
Query 148366 CCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408
|| ||||| | ||| | || || | ||||| | || ||||
Sbjct 44829 CCGAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATCGCCG 44787
>seq1073
Length=8604
Score = 91.5 bits (100), Expect = 1e-13
Identities = 328/507 (65%), Gaps = 7/507 (1%)
Strand=Plus/Plus
Query 46758 GTGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCC 46817
|| || ||| ||||||| |||||| | |||||| | ||||||||| | | ||| ||
Sbjct 2583 GTTCCCTGCATTCGCAAGAAGGCCGACTGGGCCCTCAAGTGGATCAACGACCAGAAGTCC 2642
Query 46818 ACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGT 46877
|| | || |||| | || || ||||| || || ||| | || || || ||
Sbjct 2643 ACTTTCGCTCAGCGTCTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCC 2702
Query 46878 TTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAAC 46937
||||| |||| |||| | || | || | ||||| |||||||| ||| ||
Sbjct 2703 TTTGCGTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTGACCTTCTCCAAT 2762
Query 46938 GAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACG 46997
|| | ||||| |||||||||||||| ||||| || ||||| || || ||| |
Sbjct 2763 GAACTCATCTCTCGCGACGAAGGACTGCACACCGATTTTGCCTGCCTGCTCTAC---TCC 2819
Query 46998 CGCGTGAATGAGAAATTAAACTCGGACACGATCCTGAGCATGTTTAGGGAGGCGGTGAGC 47057
| | |||| | | | | | |||| | ||| || || || || |
Sbjct 2820 CACCTGAAGCACCGCCCCAGCAAGCAGGTCATCCGGGACATCATTGTCGACGCCGTCAAG 2879
Query 47058 ATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAG 47117
|| || ||||||| | || | ||| |||||| || | || || ||||| | ||
Sbjct 2880 ATTGAGCAGGAGTTCCTCACCGAGGCTCTGCCCTGCGGTCTCCTCGGGATGAATTC-CAA 2938
Query 47118 TCT-ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACC 47176
|| ||| | || ||||| |||||||| || |||||| |||| ||||| |||
Sbjct 2939 CCTCATGAAGCAGTACATTGAATTTGTGGCCGACCGTCTGCTGGTTACCCTCGG-CAATG 2997
Query 47177 GAAATAT-TTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCA 47235
||| | | || | | ||||| ||||| |||||| | ||||| || || | ||||
Sbjct 2998 AAAAGGTCTACAAGTCAAGCAATCCCTTTGACTTTATGGAGAACATCTCCCTTGGTGGCA 3057
Query 47236 AAACCAATTTTTTCGAGAAACGAGTCG 47262
| ||||| || || ||||| || ||||
Sbjct 3058 AGACCAACTTCTTTGAGAAGCGTGTCG 3084
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476603598051360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |