Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq410 165 1e-35 >seq410 Length=292899 Score = 165 bits (182), Expect = 1e-35 Identities = 351/530 (66%), Gaps = 47/530 (9%) Strand=Plus/Minus Query 146906 CCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGT 146965 ||| ||| | ||||| | |||||||||| ||| || ||||||||||| |||| | || Sbjct 35967 CCAACTGCACCTTCAGCGCGTCCACGTGGTCGAGATACACGTGCGCGTCGCCCATGACGT 35908 Query 146966 GCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGT 147025 | | | || || ||||| || | || | || | ||| | ||||||||||| || Sbjct 35907 GTGTCAGGCTTCCTGGAATAAGGTCGCACGCGCGCGCAATCATATGGGTGAGCAGCGCGT 35848 Query 147026 AGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGC 147085 | ||||| |||||||| || || |||||||||||||| | || | |||||||||||||| Sbjct 35847 AACTGGCAATGTTGAATGGCACTCCCAGGCCCATGTCACAGGAGCGCTGGTACAGCTGGC 35788 Query 147086 ACGAGA------------GCTCCCCGTCGGCC---------------------------A 147106 | | ||| | | || ||| | Sbjct 35787 AGTGCAAATGTCCCTTCGGCTTCTCCTCCGCCGAAGCATTTCGCGATCTGGGGTACGAGA 35728 Query 147107 CGTAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGG 147165 |||||||||| ||| | |||||||| ||||| |||||||| ||||||||||||| Sbjct 35727 CGTAAAACTGAGCAAAC-ATGTGGCAGGGCGGGAGCGCCATCTTCTTCAGGTCCGCGGGG 35669 Query 147166 TTCCAGGCCGAGACCACCAGCCGCCTGCTCTCG---GGGTTCCTCTTAATCTCTTCGATA 147222 ||||| || | || ||| || || ||| |||||| |||| | | || || Sbjct 35668 TTCCACGC---GCTCAGCAGGATCCGGCGGTCGTACGGGTTCGTCTTGAGTTTTTGAATG 35612 Query 147223 ACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTG 147282 ||| ||| ||||| |||||||||||| |||| ||| | ||| |||||| | Sbjct 35611 ACCTCGGCCAGTTGGTCGACGCCCTGGCCCGTATAGTCCGTCTTGGCGTCGACGTACTCG 35552 Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 || || ||||||| ||| |||||||||||||| || || || |||||| | | ||| Sbjct 35551 GCGCCGAAGTGCCGCCATTGGAAGCCGTACACGGGGCCGAGATCGCCGACTTCGCGGTGG 35492 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGAT 147392 || | ||| | | | ||||||||| | || |||| ||||||| || Sbjct 35491 GAAAGGCCGACACTGTCAAGAAACTCGCGCGAGCCGTTTCCGTCCCAAAT 35442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583478693366400