Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq164 159 5e-33
seq1073 129 8e-24
seq181 125 1e-22
seq268 87.8 3e-11
>seq164
Length=162670
Score = 159 bits (176), Expect = 5e-33
Identities = 340/504 (67%), Gaps = 23/504 (5%)
Strand=Plus/Plus
Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741
|||||||||| |||||| | || || | ||| ||| ||||| |||| |||||
Sbjct 44768 CACAAGGAGGAGCTCGACTCGGCGATTGTCTACGACCGTGACTTCAACTACCAATACTTC 44827
Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGC---GCGATATTGTCGTCGAG 259798
|| | ||||||| |||| ||||| ||| | || | |||| || ||
Sbjct 44828 GGCTTCAAGACCTTGGAGAGGTCGTACCTCCTCAAGATCGATGGCAAGATTGCCG---AG 44884
Query 259799 CGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGAC 259858
|||| || | ||| | ||||||||||| ||||| ||| |||| |||
Sbjct 44885 AGGCCGCAACACATGATTATGCGTGTCGCTGTTGGC-ATTTGGGGT-----------GAC 44932
Query 259859 AATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTC 259917
|| | | |||| ||| ||| || ||| | |||||| |||| | ||||||||
Sbjct 44933 AACG---TTGAGCGCGTTATCGAGACGTACAACTTGATGTCG-AGCAAGCTGTTCACCCA 44988
Query 259918 AGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCT 259977
|| ||||||| || || || |||||||| || | | || || |||||||| ||
Sbjct 44989 TGCCTCGCCCACTCTGTTCAACGCCGGCACCCCTCAGGCCCAACTGTCTTCGTGCTTCCT 45048
Query 259978 GTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCT 260037
| || ||||||| || || ||||| |||||||| ||||| |||||| |||||| |
Sbjct 45049 CGTCGATATGAAGGAGGACTCCATCGAAGGCATCTACGACACCCTCAAGACGTGCGCCAT 45108
Query 260038 CATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGC 260097
|| |||||| ||| || ||||||||| | || || | || || | ||| |
Sbjct 45109 GATTTCCAAGATGGCTGGAGGCATCGGTCTCAACGTCCATCGCATTCGTTCCACTGGCTC 45168
Query 260098 CTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAA 260157
|||| | |||||||||||||| |||||||| | || || ||||| || || || ||
Sbjct 45169 CTACATCGCGGGCACCAACGGAACCTCCAACGGTGTCGTCCCTATGCTGCGTGTCTTCAA 45228
Query 260158 CGACACGGCGCGCTACGTCGACCA 260181
| |||| || ||||| ||||||||
Sbjct 45229 CAACACCGCTCGCTATGTCGACCA 45252
Score = 89.7 bits (98), Expect = 7e-12
Identities = 136/191 (71%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 262097 TGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGAC 262156
|||| ||||| | | ||| || | ||||| |||| |||| |||| | |||||||||
Sbjct 45557 TGGTACGCCATCCTTGAGGCGCAGACGGAGACGGGCAACCCCTTCATGCTGTACAAGGAC 45616
Query 262157 GCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAACCTGTG 262215
|||| ||||| | ||||||||| ||||||| || |||| | ||| ||||||| ||
Sbjct 45617 GCCGCCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCCGCAG-CTCCAACCTTTG 45675
Query 262216 CACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAACCTCTCGAGCGT 262275
||| || ||| || ||| ||| |||| |||| || |||||||| | |
Sbjct 45676 CACTGAAATCATCGAGTACTCGGCGCCTGATGAGGTTGCCGTCTGCAACCTGGCTTCTCT 45735
Query 262276 GGCCCTGCCCA 262286
|||||||||||
Sbjct 45736 GGCCCTGCCCA 45746
>seq1073
Length=8604
Score = 129 bits (142), Expect = 8e-24
Identities = 211/299 (71%), Gaps = 5/299 (2%)
Strand=Plus/Plus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| || ||||||||||| || || ||||||||||||||| | |||
Sbjct 2193 GATTTGGCAAATGTAC-AAGAAGGCCGAGGCGTCATTCTGGACCGCCGAGGAGATTGACT 2251
Query 1455835 TCGGCGCCGACACGGTCCACTGGG-TGTC--GCTGAGCGACGACGAGCGCCATTTCATCA 1455891
| | ||| | ||||| | | | | | |||||||||| ||||||
Sbjct 2252 TGTCCAAGGACCTTCACGACTGGAATAACAAGATTAACGACGACGAGAAGTTCTTCATCT 2311
Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951
||| |||||||||| || ||| ||| || || || || ||||||||||| |
Sbjct 2312 CTCACATCCTCGCCTTCTT-CGCTGCCTCGGACGGTATTGTCAACGAGAACCTGGTTGAA 2370
Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011
||||| | || ||||| | || ||||| |||| || ||||| |||||||||
Sbjct 2371 CGCTTCAGCGGTGAAGTCCAGGTCCCCGAGGCGCGTTGCTTCTACGGCTTCCAGATCATG 2430
Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070
|| |||||||||||||| || ||||| || || || ||||| || ||| | ||||| ||
Sbjct 2431 ATGGAAAACATCCACTCCGAGACCTATTCTCTTCTCATCGATACGTACATTAAGGAGCC 2489
Score = 111 bits (122), Expect = 2e-18
Identities = 145/192 (76%), Gaps = 8/192 (4%)
Strand=Plus/Plus
Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAG 1456181
|| |||||||||||||| | |||||||||||| | || || |||||| || ||
Sbjct 2598 AAGAAGGCCGACTGGGCCCTCAAGTGGATCAACGACCAGAAG-TC--CACTTTCGCTCAG 2654
Query 1456182 CGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCAT 1456239
|| || |||| ||| || || || ||||||||||| ||||| || || |||| ||||
Sbjct 2655 CGTCTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCCTT-TGCGTCCAT 2713
Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCA 1456299
|||||||||||||||||| || |||||||| || | | ||| ||| ||| | |||
Sbjct 2714 CTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGG-CCTGACCTTCTCCAATGAACTCATCT 2772
Query 1456300 GTCGCGACGAAG 1456311
|||||||||||
Sbjct 2773 CTCGCGACGAAG 2784
Score = 104 bits (114), Expect = 3e-16
Identities = 178/253 (70%), Gaps = 4/253 (2%)
Strand=Plus/Plus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
||||| ||||| |||||| |||| ||| | ||||| ||| |||| | ||||| |
Sbjct 2859 ATCATTGTCGACGCCGTCAAGATTGAGCAGGAGTTCCTCACCGAGGCTCTGCCCTGCGGT 2918
Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642
||| |||| ||||| ||| | |||||| ||||||||||||||| || |||||||| |
Sbjct 2919 CTCCTCGGGATGAATTCCAAC-CTCATGAAGCAGTACATTGAATTT-GTGGCCGACCGTC 2976
Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702
|||| | | |||||| | | ||| |||| | | ||| || || | |||
Sbjct 2977 TGCTGGTTACCCTCGGCAATGAA-AAGGTCTACAAGTCAAGCAATCCCTTTGACTTTATG 3035
Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761
||| ||||| || | |||||||||||||| || ||| || || | ||| |||
Sbjct 3036 GAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGCCGATTACCAG 3095
Query 1456762 AAGGCCGGCGTCA 1456774
||||| |||||||
Sbjct 3096 AAGGCTGGCGTCA 3108
>seq181
Length=205887
Score = 125 bits (138), Expect = 1e-22
Identities = 135/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 332876 CGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAGGCC 332935
||||||||||| || || |||||| | |||||||| | | |||| |||||||||
Sbjct 71034 CGCAGGATGGCGCAGCGCGACTGCAGCGGCTCGATGATCTTGTTCGACTGGTTGCAGGCA 71093
Query 332936 AGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGCC 332995
| || ||||||||||| |||| | ||||||| || ||||||||||| || ||
Sbjct 71094 AACGCGAACCGCGTCGTGTTGGAGTAGATTTCCATCGTTCGGCGGAGGGCCTGCTGCGCG 71153
Query 332996 GCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCAG 333054
||| || | || |||||| ||||||||||||| | ||||||||| || ||||||||
Sbjct 71154 CCCGATGTCATGCTGTCGGCTTCGTCGAGGATGACCAGCTTGTGGCGGCCCTGCGGCAG 71212
>seq268
Length=159911
Score = 87.8 bits (96), Expect = 3e-11
Identities = 158/229 (69%), Gaps = 18/229 (8%)
Strand=Plus/Plus
Query 2129647 TTGGGCGCGCCCGTCATCGAGCCTGGGGGAAAAGCCGCGCGCACGAGGTCCAGCGCCGTC 2129706
||||||||||||||||| || || || || ||| || ||||| ||| ||||
Sbjct 27025 TTGGGCGCGCCCGTCATGCTCCCCGGCGGCAAGCTCGCCGCCAGCAGGTCGAGCCCCGTG 27084
Query 2129707 TGT-TGTCGGTCC-----AACAGGCCGTCGACGGTGGTCACCATCTGGTGCACGGCGGCA 2129760
|| | || |||| ||| | |||| ||| |||| | ||||||| ||||| |||
Sbjct 27085 TGCCTCTCCGTCCGCGGCAACTGCCCGTTGACAATGGTGATCATCTGGAACACGGTGGCG 27144
Query 2129761 TAGGTCTCGATCGCCATCAGCCGGCCGCGCGGCACGACGACGCTGCCGGGCGCGCAGCAC 2129820
|| ||||| | |||||| | ||||||| ||| |||| || || |||
Sbjct 27145 TACTCCTCGACCTTCATCAG------GTGCGGCACCGTCACGTTGCC---CGAGCCGCAG 27195
Query 2129821 ACGCT---CAGGTCGTTGCGCACCAGATCGACGATCATGAGGTTCTCGG 2129866
|||| |||||||| ||| || || ||||| ||||||||||||||||
Sbjct 27196 ACGCCGTGCAGGTCGTGGCGGACGAGGTCGACAATCATGAGGTTCTCGG 27244
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177688127454712
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |