Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq63 125 6e-24
seq245 116 3e-21
seq663 102 7e-17
>seq63
Length=145700
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | || ||||| || | || |||||| || |||||||| |||| |
Sbjct 39599 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 39540
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || |||| || |||||||| || || || ||||| ||||||||||| | ||
Sbjct 39539 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 39480
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || |||||||||| |||||| ||| | | | | | |||||| || ||||||
Sbjct 39479 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 39420
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | ||||| || |||||||| | || || || || ||||||||
Sbjct 39419 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 39373
>seq245
Length=397273
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||||| || | ||| |||||| || |||||||||||||
Sbjct 356214 CCACCACGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGAT 356273
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || | || |||| |||||| || || || || | || |||||||| | ||||
Sbjct 356274 AGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAGGAGGA 356333
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || |||||||||| |||||| ||||| | | | | ||||| || || ||
Sbjct 356334 ATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCTGAAGACTCGACT 356393
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| |||||||| || || ||||| || || || || || |||||
Sbjct 356394 TCCAAAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAAATTTGCAT 356440
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586
|||||| || || ||| |||||| |||||||||||||||| | || || | || ||
Sbjct 356459 CACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGTAATCGGAGAGCGTGCGACCATCCTC 356518
Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646
|| || || || || || || | ||||||||||| | ||||| | ||||||||||
Sbjct 356519 AAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTG 356578
Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705
||||| ||| | |||| | | || || || || ||||||| || || || |
Sbjct 356579 AATCTTCGACTTGA-CGTTGTCGATGGTATCCGAAGACTCGACCTCCAAAGTAATGGTCT 356637
Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
| || |||| ||| || || || ||||||||
Sbjct 356638 TGCCGGTCAGAGTCTTGACGAAAATCTGCAT 356668
>seq663
Length=189090
Score = 102 bits (112), Expect = 7e-17
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606
|||| || |||||||| |||| | ||| || |||| || ||||||||||| || || |
Sbjct 17601 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGA 17542
Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666
|||| ||||||||||| | || | || |||||||||| |||||| ||| | | |
Sbjct 17541 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 17482
Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726
| | |||||| || || ||||| | || || || |||||||||| || || || |
Sbjct 17481 CGATCGTGTCCGAGGACTCAACCTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTAACGA 17422
Query 35727 A 35727
|
Sbjct 17421 A 17421
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450786409842080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |