Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq245 136 4e-27 seq63 132 5e-26 seq663 107 2e-18 seq164 98.7 1e-15 >seq245 Length=397273 Score = 136 bits (150), Expect = 4e-27 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || |||||||||||||| ||||||||||||| | |||| || || || Sbjct 356688 ACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCA 356747 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || ||||||| |||||||| ||||| || || || || || || ||| Sbjct 356748 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGA 356807 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | || ||||| || || || |||||||| ||||| || Sbjct 356808 ATCTTGGACTTGACATTGTCGATGGTATCGGAGGACTCAACCTCGAGAGTGATGGTCTTT 356867 Query 134685 CCGGT 134689 ||||| Sbjct 356868 CCGGT 356872 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | ||| | ||| | || || ||||| ||||||||||| ||| Sbjct 356442 CCTCCGCGGAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGTAATCGGAG 356501 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || || ||||| || || || || | ||||||||| || || || Sbjct 356502 AGCGTGCGACCATCCTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGA 356561 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || ||||| ||| | || || || || || || Sbjct 356562 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGACC 356621 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||||||||| || ||||| | ||| || |||||||| ||||| Sbjct 356622 TCCAAAGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 356668 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| | ||| ||||| || ||||| || |||||||| ||| Sbjct 356214 CCACCACGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGAT 356273 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || | ||| ||||| || || || | ||| ||||| || || || Sbjct 356274 AGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAGGAGGA 356333 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || ||| | ||||| || || || || Sbjct 356334 ATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCTGAAGACTCGACT 356393 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||| || || || ||||| || || || |||||||||||||| Sbjct 356394 TCCAAAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAAATTTGCAT 356440 >seq63 Length=145700 Score = 132 bits (146), Expect = 5e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || ||||| ||||| || |||||||||||| | |||| | Sbjct 39590 AGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 39531 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || || ||||| |||||||| ||||| || ||||| || Sbjct 39530 CCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCC 39471 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | |||||||| || ||||| || || || Sbjct 39470 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTG 39411 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| || | || || ||||| || ||||| Sbjct 39410 ATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 39373 >seq663 Length=189090 Score = 107 bits (118), Expect = 2e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 134521 ATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAA 134580 || |||| || |||||||||||| | |||| | ||| || ||||| || || || | Sbjct 17604 ATACCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGA 17545 Query 134581 AAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCG 134640 | ||||| |||||||| ||||| || ||||| || || || || || || ||||| Sbjct 17544 AGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACAT 17485 Query 134641 CGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAA 134700 ||| | ||||| || || || || ||||| |||||||| ||||| || | || |||| Sbjct 17484 TGTCGATCGTGTCCGAGGACTCAACCTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTAA 17425 Query 134701 CGAA 134704 |||| Sbjct 17424 CGAA 17421 >seq164 Length=162670 Score = 98.7 bits (108), Expect = 1e-15 Identities = 278/421 (66%), Gaps = 7/421 (2%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 ||||||||| | |||| || || || |||||| || || || |||| || | Sbjct 44891 CAACACATGATTATGCGTGTCGCTGTTGGCATTTGGGGTGACAACGTTGAGCGCGTTATC 44950 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || |||||| | ||||||| || | ||| || || || |||||||| |||| | Sbjct 44951 GAGACGTACAACTTGATGTCGAGCAAGCTGTTCACCCATGCCTCGCCCACTCTGTTCAAC 45010 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 || ||||| | | ||| |||| ||||| || | | ||| || ||| | Sbjct 45011 GCCGGCACCCCTCAGGCCCAACTGTCTTCGTGCTTCCTCGTCGATATGAAGGAGGACTCC 45070 Query 7744 ATCGACGGCATTTACAACACGCTGCGCGAT-TGCGCCAATATTTCCAAATACGGC-GGCG 7801 ||||| ||||| ||| |||| || | || ||||||| |||||||| | ||| || | Sbjct 45071 ATCGAAGGCATCTACGACACCCT-CAAGACGTGCGCCATGATTTCCAAG-ATGGCTGGAG 45128 Query 7802 GAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACG 7861 | || ||||| ||||| | | | || ||| || | ||||| | |||||||| Sbjct 45129 GCATCGGTCTCAACGTCCATCGCATTCGTTCCACTGGCTCCTACATCGCGGGCACCAACG 45188 Query 7862 GAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAG 7921 ||| ||| |||| | | || ||| |||| || ||||| ||| | | || |||| | Sbjct 45189 GAACCTCCAACGGTGTCGTCCCTATGCTGCGTGTCTTCAACAACACCGCTCGCTATGTCG 45248 Query 7922 ACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGG 7978 |||| || || ||||| || ||| |||||||| | ||||| |||||||| | Sbjct 45249 ACCAAGGCGGTAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCCTGGCACGCCG 45308 Query 7979 A 7979 | Sbjct 45309 A 45309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505390338895520