Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq164 96.9 3e-15 seq245 87.8 2e-12 >seq164 Length=162670 Score = 96.9 bits (106), Expect = 3e-15 Identities = 456/711 (64%), Gaps = 29/711 (4%) Strand=Plus/Minus Query 131549 TCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACTGTC--CAAATTGGGA- 131605 ||||| || |||||||||| ||||| | | ||| | || ||| | | ||| Sbjct 45513 TCGTACTTCTCGTACAACGCCTCAAACTCCTCGCCGTA---ACAGTCGGCGAGGCCGGAG 45457 Query 131606 CATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAA 131665 || ||| |||||||||| || | ||| | ||||||| || |||| |||||| || | | Sbjct 45456 CACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGA 45397 Query 131666 TCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtt 131725 || || | ||| | ||| || ||||| | || ||| || | || | || Sbjct 45396 TCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCG-TGGTT 45338 Query 131726 tttttCAA-ATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCAT 131784 || || || | || || || | || || |||||||| || | || | || | Sbjct 45337 CTTGCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAA 45278 Query 131785 TGCGCCTTTGCGCTT---ACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCG 131841 || || ||||| ||||||||| | |||| ||| | |||||||| | || || Sbjct 45277 GGCACCAGGTCGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACG 45218 Query 131842 CAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGC 131901 || ||| || | | |||||||| | |||| ||||||| | |||||| |||| ||| Sbjct 45217 CAGCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGA 45158 Query 131902 TCTGATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCGCATT 131960 | || || |||||||| || || ||||| ||| | || || || | ||||| Sbjct 45157 ACGAATGCGATGGACGTTGAGACCGATGCCTCCAGCCAT-CTTGGAAATCATGGCGCACG 45099 Query 131961 TGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAAG 132020 | | || |||| ||||| ||||| | | |||| | || ||||| | ||||| | Sbjct 45098 TCTTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACG 45039 Query 132021 AGGACAACTGTTGG---TGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGTAA 132077 | |||| ||||| ||| |||||||| |||| ||||| ||| || || | Sbjct 45038 AAGACA---GTTGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGA 44982 Query 132078 AAAGTTTTTTGGCCATGCACCGATACGATTGTATAGCGGACT---CGATATCGCCCAGAT 132134 | || || | | ||| | |||| | ||| || || || | || ||| | Sbjct 44981 ACAGCTTGCTCGACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCAA- 44923 Query 132135 GTATGGTCAATGCGACCCGCATGTACATGTGTTGAATGCGCTCGGCCGTTTTGCCGTCGA 132194 ||| | ||||| ||||| ||||||||| | |||||| | ||||| |||| Sbjct 44922 --ATGCCAACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGA 44865 Query 132195 TTTTGATCAAATA--ACCGTTTTCCAAAGTTTTGAAACCAAAATATTTGTA 132243 | |||| | || ||| | ||||| || ||||| || || |||| ||| Sbjct 44864 TCTTGAGGAGGTACGACC--TCTCCAAGGTCTTGAAGCCGAAGTATTGGTA 44816 >seq245 Length=397273 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||| | || | ||||| || || ||||| || || ||||| ||||| ||| Sbjct 356442 CCTCCGCGGAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGTAATCGGAG 356501 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | || || || ||||| |||||| | ||||||||||| || || || || Sbjct 356502 AGCGTGCGACCATCCTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGA 356561 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || ||||| || | | | || | || || | | || || Sbjct 356562 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGACC 356621 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || | ||||| |||||||| || || || || |||||| Sbjct 356622 TCCAAAGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCATA 356669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424927791738912