Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq164 147 3e-30
seq1073 102 1e-16
>seq164
Length=162670
Score = 147 bits (162), Expect = 3e-30
Identities = 564/866 (65%), Gaps = 35/866 (4%)
Strand=Plus/Minus
Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289
|| ||||| | || |||| ||||| || || |||||| | | |||||| |
Sbjct 45744 GGCAGGGCCAGAGAAGCCAGGTTGCAGACGGCAACCTCATCAGGCGCCGAGTACTCGATG 45685
Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349
||||| || || | |||||| || || || || | ||||| ||||| ||||| |
Sbjct 45684 ATTTCAGTGCAAAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGG 45625
Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409
||| || |||||||| |||||| |||| | |||||||||||||| | | || ||
Sbjct 45624 TTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGATG 45565
Query 111410 GCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCCTCGTA 111465
|| | ||| | | || | | || | |||| ||| | || | ||||| ||||||
Sbjct 45564 GCGTACCACAGCTTCTGGGCCTTG----ATGGTCTTGCGACCCTTACCCTCGCGCTCGTA 45509
Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGC-CTTGT 111524
||| ||| | || ||||||||||| || ||||| ||| || || || || ||
Sbjct 45508 CTTCTCGTACAACGCCTCAAACTCCTCGCCGTAACAGTCGGCGAGGCC-GGAGCACTCGT 45450
Query 111525 CTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 111584
||||| | |||| ||| | ||| | ||| || | ||||||||| || || || |
Sbjct 45449 TGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGATCAGGGA 45390
Query 111585 TCCACAGG--GATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTC 111641
|||| ||| || |||| ||||| | ||| || |||| || | || ||||| |
Sbjct 45389 TCCAAAGGGCGAGGAAA--AGATCGCGGGCACGGA-CCTCCTCCTTGCCGTGGTTCTTGC 45333
Query 111642 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA------ 111695
| | || |||||||| | || ||| |||||||| |||||||| |||| ||||
Sbjct 45332 GAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCAC 45273
Query 111696 TAGATCCCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAA 111755
|| || ||| | || |||| | |||||||| || ||| ||| || || || |
Sbjct 45272 CAGGTCGCTTGTTA---CCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCA 45216
Query 111756 GCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGC 111813
|||| || | | ||| | || || || || ||| ||| || ||| | |||
Sbjct 45215 GCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAG--CCAGTGGA 45158
Query 111814 TCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTC 111873
| | ||||| || | || || || |||||| ||| || || || |||
Sbjct 45157 ACGAATGCGATGGACGTTGAGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCACGT 45098
Query 111874 CGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACT 111933
| | || || | ||||| || | ||| ||||||||||| | ||| ||||||||
Sbjct 45097 CTTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGA 45038
Query 111934 GGACATCTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA 111992
|||| || || || || || || || ||||| || || || | || || |||||
Sbjct 45037 AGACAGTTG-GGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAAC- 44980
Query 111993 TACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGAT 112050
| |||| |||||| || ||| ||||| | || |||| || || || ||
Sbjct 44979 -AGCTTGCTCGACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCAAAT 44921
Query 112051 GCCGATTGCGACCCGCATGAACATGT 112076
||| | ||||| ||||| | |||||
Sbjct 44920 GCCAACAGCGACACGCATAATCATGT 44895
>seq1073
Length=8604
Score = 102 bits (112), Expect = 1e-16
Identities = 288/440 (65%), Gaps = 2/440 (0%)
Strand=Plus/Minus
Query 122378 CGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAA 122437
|||| ||||||||||||||||||||||| ||| ||||| ||||| |||||||||||||
Sbjct 3084 CGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATAAAGTCAA 3025
Query 122438 ATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGATCCGACA 122497
| ||||| | | || | | | || | || ||||| || | ||
Sbjct 3024 AGGGATTGCTTGACTTGTAGACCTTTTCATTGCCGAGGGTAACCAGCAGACGGTCGGCCA 2965
Query 122498 CATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGTG 122557
|| | |||||||||| ||| | || ||||| |||| ||| || || || |
Sbjct 2964 CAAATTCAATGTACTGCTTCATGAGGTTGGAATTCATCCCGAGGAGACCGCAGGGCAGAG 2905
Query 122558 CGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTTT 122617
| || || |||| | | |||||||| || || || | |||| | |||| |
Sbjct 2904 CCTCGGTGAGGAACTCCTGCTCAATCTTGACGGCGTCGACAATGATGTCCCGGATGACCT 2845
Query 122618 CGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTCCTGGTGGAGAC 122677
| |||| | | || | ||||| |||||| || ||| || |
Sbjct 2844 GCTTGCTGGGGCGGTGCTTCAGGTGGGAGTAGAGCAGGCAGGCAAAATCGGTGTGCAGTC 2785
Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737
| || || || || || |||||||| |||||| || || ||||||||||| |||||||
Sbjct 2784 CTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGCCAGGCATGAGACCACGCTTCT 2725
Query 122738 TCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796
| | |||| | || | |||| || | |||||||||||||| ||||| ||| || ||
Sbjct 2724 TGAGCCAAAAGATGGACGCA-AAGGCACCGGAGAAGAAGATGCCCTCAACAGCAGCGAAG 2666
Query 122797 GCAAAAAGGCGTTCGGCGAA 122816
|| | ||| || | |||||
Sbjct 2665 GCGACAAGACGCTGAGCGAA 2646
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628021982889600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |