Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq164 147 3e-30 seq1073 102 1e-16 >seq164 Length=162670 Score = 147 bits (162), Expect = 3e-30 Identities = 564/866 (65%), Gaps = 35/866 (4%) Strand=Plus/Minus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || ||||| | || |||| ||||| || || |||||| | | |||||| | Sbjct 45744 GGCAGGGCCAGAGAAGCCAGGTTGCAGACGGCAACCTCATCAGGCGCCGAGTACTCGATG 45685 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 ||||| || || | |||||| || || || || | ||||| ||||| ||||| | Sbjct 45684 ATTTCAGTGCAAAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGG 45625 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||| || |||||||| |||||| |||| | |||||||||||||| | | || || Sbjct 45624 TTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGATG 45565 Query 111410 GCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCCTCGTA 111465 || | ||| | | || | | || | |||| ||| | || | ||||| |||||| Sbjct 45564 GCGTACCACAGCTTCTGGGCCTTG----ATGGTCTTGCGACCCTTACCCTCGCGCTCGTA 45509 Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGC-CTTGT 111524 ||| ||| | || ||||||||||| || ||||| ||| || || || || || Sbjct 45508 CTTCTCGTACAACGCCTCAAACTCCTCGCCGTAACAGTCGGCGAGGCC-GGAGCACTCGT 45450 Query 111525 CTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 111584 ||||| | |||| ||| | ||| | ||| || | ||||||||| || || || | Sbjct 45449 TGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGATCAGGGA 45390 Query 111585 TCCACAGG--GATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTC 111641 |||| ||| || |||| ||||| | ||| || |||| || | || ||||| | Sbjct 45389 TCCAAAGGGCGAGGAAA--AGATCGCGGGCACGGA-CCTCCTCCTTGCCGTGGTTCTTGC 45333 Query 111642 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA------ 111695 | | || |||||||| | || ||| |||||||| |||||||| |||| |||| Sbjct 45332 GAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCAC 45273 Query 111696 TAGATCCCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAA 111755 || || ||| | || |||| | |||||||| || ||| ||| || || || | Sbjct 45272 CAGGTCGCTTGTTA---CCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCA 45216 Query 111756 GCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGC 111813 |||| || | | ||| | || || || || ||| ||| || ||| | ||| Sbjct 45215 GCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAG--CCAGTGGA 45158 Query 111814 TCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTC 111873 | | ||||| || | || || || |||||| ||| || || || ||| Sbjct 45157 ACGAATGCGATGGACGTTGAGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCACGT 45098 Query 111874 CGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACT 111933 | | || || | ||||| || | ||| ||||||||||| | ||| |||||||| Sbjct 45097 CTTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGA 45038 Query 111934 GGACATCTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA 111992 |||| || || || || || || || ||||| || || || | || || ||||| Sbjct 45037 AGACAGTTG-GGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAAC- 44980 Query 111993 TACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGAT 112050 | |||| |||||| || ||| ||||| | || |||| || || || || Sbjct 44979 -AGCTTGCTCGACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCAAAT 44921 Query 112051 GCCGATTGCGACCCGCATGAACATGT 112076 ||| | ||||| ||||| | ||||| Sbjct 44920 GCCAACAGCGACACGCATAATCATGT 44895 >seq1073 Length=8604 Score = 102 bits (112), Expect = 1e-16 Identities = 288/440 (65%), Gaps = 2/440 (0%) Strand=Plus/Minus Query 122378 CGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAA 122437 |||| ||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||| Sbjct 3084 CGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATAAAGTCAA 3025 Query 122438 ATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGATCCGACA 122497 | ||||| | | || | | | || | || ||||| || | || Sbjct 3024 AGGGATTGCTTGACTTGTAGACCTTTTCATTGCCGAGGGTAACCAGCAGACGGTCGGCCA 2965 Query 122498 CATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGTG 122557 || | |||||||||| ||| | || ||||| |||| ||| || || || | Sbjct 2964 CAAATTCAATGTACTGCTTCATGAGGTTGGAATTCATCCCGAGGAGACCGCAGGGCAGAG 2905 Query 122558 CGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTTT 122617 | || || |||| | | |||||||| || || || | |||| | |||| | Sbjct 2904 CCTCGGTGAGGAACTCCTGCTCAATCTTGACGGCGTCGACAATGATGTCCCGGATGACCT 2845 Query 122618 CGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTCCTGGTGGAGAC 122677 | |||| | | || | ||||| |||||| || ||| || | Sbjct 2844 GCTTGCTGGGGCGGTGCTTCAGGTGGGAGTAGAGCAGGCAGGCAAAATCGGTGTGCAGTC 2785 Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 | || || || || || |||||||| |||||| || || ||||||||||| ||||||| Sbjct 2784 CTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGCCAGGCATGAGACCACGCTTCT 2725 Query 122738 TCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 | | |||| | || | |||| || | |||||||||||||| ||||| ||| || || Sbjct 2724 TGAGCCAAAAGATGGACGCA-AAGGCACCGGAGAAGAAGATGCCCTCAACAGCAGCGAAG 2666 Query 122797 GCAAAAAGGCGTTCGGCGAA 122816 || | ||| || | ||||| Sbjct 2665 GCGACAAGACGCTGAGCGAA 2646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628021982889600